Evidence map›Paper›PMID 18832381›Full record

ArticleThe Journal of biological chemistry2008

A C-terminal sequence in the guanine nucleotide exchange factor Sec7 mediates Golgi association and interaction with the Rsp5 ubiquitin ligase.

Deborah A Klos Dehring, Adam S Adler, Ava Hosseini, Linda Hicke

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Unfolded protein response regulates yeast small GTPase Arl1p activation at late Golgi via phosphorylation of Arf GEF Syt1p.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Deborah A Klos DehringDepartment of Biochemistry, Molecular Biology & Cell Biology, Northwestern University, Evanston, Illinois 60208, USA.
Adam S Adler
Ava Hosseini
Linda Hicke
Northwestern University · US

Funding

CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
UBIQUITIN-DEPENDENT ENDOCYTOSIS OF SIGNALING RECEPTORSR01DK053257 · NIDDK · NORTHWESTERN UNIVERSITY · PI HICKE, LINDA A. · 1998 to 2010
$2.5M
Roles of ubiquitin protein ligases in endocytosisR01DK061299 · NIDDK · NORTHWESTERN UNIVERSITY · PI HICKE, LINDA A. · 2002 to 2005
$964k
Roles of ubiquitin ligases in endocytosisR56DK061299 · NIDDK · NORTHWESTERN UNIVERSITY · PI HICKE, LINDA A. · 2006 to 2006
$88k
NIDDK NIH HHS DK53257NIDDK NIH HHS DK61299NIGMS NIH HHS T32GM08061
6 · The paper itself

Abstract

Arf GTPases control vesicle formation from different intracellular membranes and are regulated by Arf guanine nucleotide exchange factors (GEFs). Outside of their conserved catalytic domains, known as Sec7 domains, little is known about Arf GEFs. Rsp5 is a yeast ubiquitin ligase that regulates numerous membrane trafficking events and carries a C2 domain that is specifically required for trans-Golgi network to vacuole transport. In a screen for proteins that interact with the Rsp5 C2 domain we identified Sec7, the GEF that acts on Golgi-associated Arfs. The Rsp5-Sec7 interaction is direct, occurs in vivo, and is conserved among mammalian Rsp5 and Sec7 homologues. A 50-amino acid region near the Sec7 C terminus is required for Rsp5 binding and for normal Sec7 localization. Binding of Sec7 to Rsp5 is dependent on the presence of the phosphoinositide 3-kinase Vps34, suggesting that phosphatidylinositol 3-phosphate (PI(3)P) plays a role in regulating this interaction. Overexpression of Sec7 significantly suppresses the growth and sorting defects of an rsp5 C2 domain point mutant. These observations identify a new functional region within the Sec7/BIG family of Arf GEFs that is required for trans-Golgi network localization.

Indexed as

CatalysisEndosomal Sorting Complexes Required for TransportGenotypeGolgi ApparatusGreen Fluorescent ProteinsGuanine Nucleotide Exchange FactorsMicroscopy, FluorescencePhenotypePhosphatidylinositol PhosphatesPlasmidsPoint MutationProtein BindingProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTwo-Hybrid System TechniquesEndosomal Sorting Complexes Required for TransportGreen Fluorescent ProteinsGuanine Nucleotide Exchange Factorsphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesRSP5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSec7 guanine nucleotide exchange factorsUbiquitin-Protein Ligase Complexes

Identifiers

PMID18832381
PMCPMC2590713
OpenAlexW2100524871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.