Evidence map›Paper›PMID 18832360›Full record

ArticleGenetics2008

Chromosome-scale genetic mapping using a set of 16 conditionally stable Saccharomyces cerevisiae chromosomes.

Robert J D Reid, Ivana Sunjevaric, Warren P Voth, Samantha Ciccone, Wendy Du, Aileen E Olsen, David J Stillman, Rodney Rothstein

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. Article
  7. New reporters for monitoring cellular NMD.RNA (New York, N.Y.) · 2025
    Article
  8. Article
  9. Article
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  11. Article
  12. Article
  13. Article
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  15. Article
  16. Practical Approaches for the YeastInternational journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Chromosome drives via CRISPR-Cas9 in yeast.Nature communications · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Robert J D ReidDepartment of Pathology, University of Utah Health Sciences Center, Salt Lake City, Utah 84112, USA.
Ivana Sunjevaric
Warren P Voth
Samantha Ciccone
Wendy Du
Aileen E Olsen
David J Stillman
Rodney Rothstein
Columbia University Irving Medical Center · USUniversity of Utah · US

Funding

Mechanism of spontaneous and DSB-induced repairR37GM050237 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ROTHSTEIN, RODNEY J. · 2005 to 2014
$6.0M
MOLECULAR MECHANISMS IN TRANSCRIPTIONAL REGULATIONR01GM039067 · NIGMS · UNIVERSITY OF UTAH · PI STILLMAN, DAVID J · 1988 to 2013
$3.9M
MECHANISM OF SPONTANEOUS AND DSB-INDUCED REPAIRR01GM050237 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ROTHSTEIN, RODNEY J. · 1993 to 2016
$3.0M
PROMOTER SPECIFICITY OF TRANSCRIPTION FACTORSR01GM048624 · NIGMS · UNIVERSITY OF UTAH · PI STILLMAN, DAVID J · 1993 to 2010
$2.7M
Using synthetic dosage lethality to screen for novel anti-tumor targetsR33CA125520 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ROTHSTEIN, RODNEY J. · 2007 to 2009
$1.0M
PCR AND RECOMBINATION FOR GENOMIC ANALYSIS IN YEASTF32HG000193 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REID, ROBERT J · 1999 to 2001
$94k
RECOMBINATION DIRECTED CONSTRUCTION OF PORTABLE LIBRARYR01HG001620 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ROTHSTEIN, RODNEY J. · 1997 to 1999
–
NCI NIH HHS CA125520NCI NIH HHS R33 CA125520NHGRI NIH HHS F32 HG000193NHGRI NIH HHS HG00193NHGRI NIH HHS HG01620NHGRI NIH HHS R01 HG001620NIGMS NIH HHS GM39067NIGMS NIH HHS GM48624NIGMS NIH HHS GM50237NIGMS NIH HHS GM57254NIGMS NIH HHS R01 GM039067NIGMS NIH HHS R01 GM048624NIGMS NIH HHS R01 GM050237NIGMS NIH HHS R37 GM050237
6 · The paper itself

Abstract

We have created a resource to rapidly map genetic traits to specific chromosomes in yeast. This mapping is done using a set of 16 yeast strains each containing a different chromosome with a conditionally functional centromere. Conditional centromere function is achieved by integration of a GAL1 promoter in cis to centromere sequences. We show that the 16 yeast chromosomes can be individually lost in diploid strains, which become hemizygous for the destabilized chromosome. Interestingly, most 2n - 1 strains endoduplicate and become 2n. We also demonstrate how chromosome loss in this set of strains can be used to map both recessive and dominant markers to specific chromosomes. In addition, we show that this method can be used to rapidly validate gene assignments from screens of strain libraries such as the yeast gene disruption collection.

Indexed as

Chromosome MappingChromosomes, FungalDiploidyLoss of HeterozygosityMeiosisModels, GeneticPhenotypeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID18832360
PMCPMC2600922
OpenAlexW2155012056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.