ArticleProceedings of the National Academy of Sciences of the United States of America2008
Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed, 45 citations in OpenAlex.
- Are non-protein coding RNAs junk or treasure?: An attempt to explain and reconcile opposing viewpoints of whether the human genome is mostly transcribed into non-functional or functional RNAs.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024Article
- Full-length LTR retroelements in Capsicum annuum revealed a few species-specific family bursts with insertional preferences.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021Article
- A high-quality chromosome-scale assembly of the centipedegrass [Eremochloa ophiuroides (Munro) Hack.] genome provides insights into chromosomal structural evolution and prostrate growth habit.Horticulture research · 2021Article
- Genome-wide mapping reveals R-loops associated with centromeric repeats in maize.Genome research · 2021Article
- Becoming a Selfish Clan: Recombination Associated to Reverse-Transcription in LTR Retrotransposons.Genome biology and evolution · 2019Review
- Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species.Scientific reports · 2018Article
- Comparative Analysis of Homologous Sequences ofFrontiers in plant science · 2018Article
- Impact of transposable elements on polyploid plant genomes.Annals of botany · 2017Review
- Article
- Inbreeding drives maize centromere evolution.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response.Genome research · 2016Article
- High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.Frontiers in plant science · 2016Article
- Diversity and evolution of centromere repeats in the maize genome.Chromosoma · 2015Article
- Evolution of centromeric retrotransposons in grasses.Genome biology and evolution · 2014Article
- Formation of a functional maize centromere after loss of centromeric sequences and gain of ectopic sequences.The Plant cell · 2013Article
- Tandem repeats derived from centromeric retrotransposons.BMC genomics · 2013Article
- The struggle for life of the genome's selfish architects.Biology direct · 2011Review
- DNA transposon dynamics in populations of Daphnia pulex with and without sex.Proceedings. Biological sciences · 2010Article
- JunctionViewer: customizable annotation software for repeat-rich genomic regions.BMC bioinformatics · 2010Article
- Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean.The Plant cell · 2010Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The term "C-value paradox" was coined by C. A. Thomas, Jr. in 1971 [Thomas CA (1971) Ann Rev Genetics 5:237-256] to describe the initially puzzling lack of correlation between an organism's genome size and its morphological complexity. Polyploidy and the expansion of repetitive DNA, primarily transposable elements, are two mechanisms that have since been found to account for this differential. While the inactivation of retrotransposons by methylation and their removal from the genome by illegitimate recombination have been well documented, the cause of the apparently periodic bursts of retrotranposon expansion is as yet unknown. We show that the expansion of the CRM1 retrotransposon subfamily in the ancient allotetraploid crop plant corn is linked to the repeated formation of novel recombinant elements derived from two parental retrotransposon genotypes, which may have been brought together during the hybridization of two sympatric species that make up the present day corn genome, thus revealing a unique mechanism linking polyploidy and retrotransposition.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.