Evidence map›Paper›PMID 18831589›Full record

ArticleACS chemical biology2008

Vinylogous ureas as a novel class of inhibitors of reverse transcriptase-associated ribonuclease H activity.

Michaela Wendeler, Hsiu-Fang Lee, Alun Bermingham, Jennifer T Miller, Oleg Chertov, Marion K Bona, Noel S Baichoo, Maryam Ehteshami, John Beutler, Barry R O'Keefe and 3 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Flavonoids and Acid-Hydrolysis derivatives ofJournal of enzyme inhibition and medicinal chemistry · 2021
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  5. 1,2,4-Triazolo[1,5-Molecules (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Michaela WendelerHIV Drug Resistance Program, National Cancer Institute, Frederick, Maryland, USA.
Hsiu-Fang Lee
Alun Bermingham
Jennifer T Miller
Oleg Chertov
Marion K Bona
Noel S Baichoo
Maryam Ehteshami
John Beutler
Barry R O'Keefe
Matthias Götte
Mamuka Kvaratskhelia
Stuart Le Grice
National Cancer Institute · USMcGill University · CANational Institutes of Health · USScience Applications International Corporation (United States) · USThe Ohio State University · USTarget (United States) · US

Funding

Molecular Targets ProgramZICBC010469 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OKEEFE, BARRY · 2009 to 2018
$31.4M
Nucleic Acid Footprinting and development of small molecule antagonistsZIABC010493 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2009 to 2021
$9.3M
Viral and Host Proteins as Therapeutic TargetsZIABC010494 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2009 to 2021
$9.0M
Structure and function of HIV-1 integraseR01AI062520 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KVARATSKHELIA, MAMUKA · 2006 to 2020
$5.3M
Unnatural Amino Acids as Probes of Protein Structure and FunctionZIABC010495 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2009 to 2014
$3.2M
High-Resolution Protein and Nucleic Acid FootprintingZ01BC010493 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2003 to 2008
$1.2M
Viral and Host Proteins as Therapeutic TargetsZ01BC010494 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2003 to 2008
$1.0M
Intramural NIH HHS Z01 BC010493Intramural NIH HHS Z01 BC010494NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NIAID NIH HHS AI062520NIAID NIH HHS R01 AI062520
6 · The paper itself

Abstract

High-throughput screening of National Cancer Institute libraries of synthetic and natural compounds identified the vinylogous ureas 2-amino-5,6,7,8-tetrahydro-4 H-cyclohepta[ b]thiophene-3-carboxamide (NSC727447) and N-[3-(aminocarbonyl)-4,5-dimethyl-2-thienyl]-2-furancarboxamide (NSC727448) as inhibitors of the ribonuclease H (RNase H) activity of HIV-1 and HIV-2 reverse transcriptase (RT). A Yonetani-Theorell analysis demonstrated that NSC727447, and the active-site hydroxytropolone RNase H inhibitor beta-thujaplicinol were mutually exclusive in their interaction with the RNase H domain. Mass spectrometric protein footprinting of the NSC727447 binding site indicated that residues Cys280 and Lys281 in helix I of the thumb subdomain of p51 were affected by ligand binding. Although DNA polymerase and pyrophosphorolysis activities of HIV-1 RT were less sensitive to inhibition by NSC727447, protein footprinting indicated that NSC727447 occupied the equivalent region of the p66 thumb. Site-directed mutagenesis using reconstituted p66/p51 heterodimers substituted with natural or non-natural amino acids indicates that altering the p66 RNase H primer grip significantly affects inhibitor sensitivity. NSC727447 thus represents a novel class of RNase H antagonists with a mechanism of action differing from active site, divalent metal-chelating inhibitors that have been reported.

Indexed as

Binding SitesCombinatorial Chemistry TechniquesFuransHIV Reverse TranscriptaseHumansReverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency VirusThiophenesUreaFuransHIV Reverse TranscriptaseNSC 727447NSC 727448reverse transcriptase, Human immunodeficiency virus 1reverse transcriptase, Human immunodeficiency virus 2Reverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency VirusThiophenesUrea

Identifiers

PMID18831589
PMCPMC2941776
OpenAlexW2008295611

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.