Evidence map›Paper›PMID 18831575›Full record

ArticleBioconjugate chemistry2008

Synthesis of peptide nucleic acid FRET probes via an orthogonally protected building block for post-synthetic labeling of peptide nucleic acids at the 5-position of uracil.

Bereket Y Oquare, John-Stephen Taylor

Abstract read
In one paragraph

Article in Bioconjugate chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Fluorogenic PNA probes.Beilstein journal of organic chemistry · 2018
    Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Bereket Y OquareDepartment of Chemistry, Washington UniversitySt Louis, Missouri 63130, USA.
John-Stephen Taylor

Funding

YOGA LIFESTYLE INTERVENTION REDUCES BLOOD PRESSURE IN HIV-INFECTED ADULTSP41RR000954 · NCRR · WASHINGTON UNIVERSITY · PI GROSS, MICHAEL L · 1985 to 2011
$16.0M
SYNTHESIS COMPONENTU01HL080729 · NHLBI · WASHINGTON UNIVERSITY · PI ABENDSCHEIN, DANA R · 2005 to 2009
$12.1M
REQUEST TO UPGRADE 600 MHZ NMR SYSTEMS10RR015715 · NCRR · WASHINGTON UNIVERSITY · PI ACKERMAN, JOSEPH J. H. · 2001 to 2001
$488k
NCRR NIH HHS P41 RR000954NCRR NIH HHS RR1571501NHLBI NIH HHS 1U01HL080729-01NHLBI NIH HHS U01 HL080729
6 · The paper itself

Abstract

We report the design and synthesis of an orthogonally protected peptide nucleic acid (PNA) building block, Fmoc-PNA-U'-(Dde)-OH, and its use in the construction of PNA FRET probes. This building block allows for the post-synthetic attachment of reporter groups to the amino group attached to the 5-position of uracil (U) following selective deprotection of the Dde group. We illustrate the use of this building block for the synthesis of a series of FAM Cy5 donor acceptor pairs and their ability to detect a target DNA sequence.

Indexed as

Base SequenceDNAFluorenesFluorescence Resonance Energy TransferFluorescent DyesPeptide Nucleic AcidsRNA, AntisenseRNA, MessengerStaining and LabelingUracilDNAFluorenesFluorescent DyesPeptide Nucleic AcidsRNA, AntisenseRNA, MessengerUracil

Identifiers

PMID18831575
PMCPMC2763603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.