Evidence map›Paper›PMID 18829450›Full record

ArticleThe Journal of biological chemistry2008

The solution structure of DNA-free Pax-8 paired box domain accounts for redox regulation of transcriptional activity in the pax protein family.

Luca Codutti, Hugo van Ingen, Carlo Vascotto, Federico Fogolari, Alessandra Corazza, Gianluca Tell, Franco Quadrifoglio, Paolo Viglino, Rolf Boelens, Gennaro Esposito

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. PAX8 in the Junction between Development and Tumorigenesis.International journal of molecular sciences · 2022
    Review
  5. Article
  6. Review
  7. Unraveling molecular targets of bisphenol A and S in the thyroid gland.Environmental science and pollution research international · 2018
    Article
  8. NMR solution structure of the RED subdomain of the Sleeping Beauty transposase.Protein science : a publication of the Protein Society · 2017
    Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Luca CoduttiDipartimento di Scienze e Tecnologie Biomediche, Università degli Studi di Udine, p.le Kolbe 4, 33100 Udine, Italy.
Hugo van Ingen
Carlo Vascotto
Federico Fogolari
Alessandra Corazza
Gianluca Tell
Franco Quadrifoglio
Paolo Viglino
Rolf Boelens
Gennaro Esposito
Istituto Nazionale Biostrutture e Biosistemi · ITUniversity of Udine · ITUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pax-8 is a transcription factor belonging to the PAX genes superfamily and its crucial role has been proven both in embryo and in the adult organism. Pax-8 activity is regulated via a redox-based mechanism centered on the glutathionylation of specific cysteines in the N-terminal region (Cys45 and Cys57). These residues belong to a highly evolutionary conserved DNA binding site: the Paired Box (Prd) domain. Crystallographic protein-DNA complexes of the homologues Pax-6 and Pax-5 showed a bipartite Prd domain consisting of two helix-turn-helix (HTH) motifs separated by an extended linker region. Here, by means of nuclear magnetic resonance, we show for the first time that the HTH motifs are largely defined in the unbound Pax-8 Prd domain. Our findings contrast with previous induced fit models, in which Pax-8 is supposed to largely fold upon DNA binding. Importantly, our data provide the structural basis for the enhanced chemical reactivity of residues Cys45 and Cys57 and explain clinical missense mutations that are not obviously related to the DNA binding interface of the paired box domain. Finally, sequence conservation suggests that our findings could be a general feature of the Pax family transcription factors.

Indexed as

Binding SitesCrystallography, X-RayDNAEye ProteinsHomeodomain ProteinsHumansMutation, MissenseNuclear Magnetic Resonance, BiomolecularPaired Box Transcription FactorsPAX5 Transcription FactorPAX6 Transcription FactorPAX8 Transcription FactorProtein Structure, SecondaryProtein Structure, TertiaryRepressor ProteinsStructural Homology, ProteinDNAEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX5 protein, humanPAX5 Transcription FactorPAX6 protein, humanPAX6 Transcription FactorPAX8 protein, humanPAX8 Transcription FactorRepressor Proteins

Identifiers

PMID18829450
PMCPMC2662260
OpenAlexW2111491649

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.