Evidence map›Paper›PMID 18826580›Full record

ArticleBMC genomics2008

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.

Roy Gross, Carlos A Guzman, Mohammed Sebaihia, Vítor A P Martins dos Santos, Dietmar H Pieper, Ralf Koebnik, Melanie Lechner, Daniela Bartels, Jens Buhrmester, Jomuna V Choudhuri and 23 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 92 citations in OpenAlex.

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  13. Evolution and Conservation ofFrontiers in microbiology · 2020
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  14. Review
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  17. Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
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  20. Environmental Origin of the GenusFrontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 10 institutions in 5 countries.

Roy GrossChair of Microbiology, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany. roy@biozentrum.uni-wuerzburg.de
Carlos A Guzman
Mohammed Sebaihia
Vítor A P Martins dos Santos
Dietmar H Pieper
Ralf Koebnik
Melanie Lechner
Daniela Bartels
Jens Buhrmester
Jomuna V Choudhuri
Thomas Ebensen
Lars Gaigalat
Stefanie Herrmann
Amit N Khachane
Christof Larisch
Stefanie Link
Burkhard Linke
Folker Meyer
Sascha Mormann
Diana Nakunst
Christian Rückert
Susanne Schneiker-Bekel
Kai Schulze
Frank-Jörg Vorhölter
Tetyana Yevsa
Jacquelyn T Engle
William E Goldman
Alfred Pühler
Ulf B Göbel
Alexander Goesmann
Helmut Blöcker
Olaf Kaiser
Rosa Martinez-Arias
Bielefeld University · DEHelmholtz Centre for Infection Research · DEUniversity of Würzburg · DEArgonne National Laboratory · USCentre National de la Recherche Scientifique · FRCharité - Universitätsmedizin Berlin · DEInstitute of Medical Microbiology and Hygiene · DEUniversity of North Carolina at Chapel Hill · USWashington University in St. Louis · USWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBordetella petrii is the only environmental species hitherto found among the otherwise host-restricted and pathogenic members of the genus Bordetella. Phylogenetically, it connects the pathogenic Bordetellae and environmental bacteria of the genera Achromobacter and Alcaligenes, which are opportunistic pathogens. B. petrii strains have been isolated from very different environmental niches, including river sediment, polluted soil, marine sponges and a grass root. Recently, clinical isolates associated with bone degenerative disease or cystic fibrosis have also been described.

resultsIn this manuscript we present the results of the analysis of the completely annotated genome sequence of the B. petrii strain DSMZ12804. B. petrii has a mosaic genome of 5,287,950 bp harboring numerous mobile genetic elements, including seven large genomic islands. Four of them are highly related to the clc element of Pseudomonas knackmussii B13, which encodes genes involved in the degradation of aromatics. Though being an environmental isolate, the sequenced B. petrii strain also encodes proteins related to virulence factors of the pathogenic Bordetellae, including the filamentous hemagglutinin, which is a major colonization factor of B. pertussis, and the master virulence regulator BvgAS. However, it lacks all known toxins of the pathogenic Bordetellae.

conclusionThe genomic analysis suggests that B. petrii represents an evolutionary link between free-living environmental bacteria and the host-restricted obligate pathogenic Bordetellae. Its remarkable metabolic versatility may enable B. petrii to thrive in very different ecological niches.

Indexed as

Genome, BacterialBacterial ProteinsBase CompositionBiological EvolutionBordetellaBordetella bronchisepticaBordetella parapertussisBordetella pertussisChromosomes, BacterialGenes, BacterialGenomic LibraryInterspersed Repetitive SequencesMolecular Sequence DataSyntenyVirulenceVirulence Factors, BordetellaBacterial ProteinsVirulence Factors, Bordetella

Identifiers

PMID18826580
PMCPMC2572626
OpenAlexW2040961869

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.