Evidence map›Paper›PMID 18826439›Full record

ArticleEnvironmental microbiology2009

Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).

Gordon Webster, Anna Blazejak, Barry A Cragg, Axel Schippers, Henrik Sass, Joachim Rinna, Xiaohong Tang, Falko Mathes, Timothy G Ferdelman, John C Fry and 2 more

Abstract read
In one paragraph

Article in Environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  9. Article
  10. Carbon and nitrogen assimilation in deep subseafloor microbial cells.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  11. Microbial ecology of the dark ocean above, at, and below the seafloor.Microbiology and molecular biology reviews : MMBR · 2011
    Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Gordon WebsterCardiff School of Biosciences, Cardiff University, Park Place, Cardiff, Wales, UK.
Anna Blazejak
Barry A Cragg
Axel Schippers
Henrik Sass
Joachim Rinna
Xiaohong Tang
Falko Mathes
Timothy G Ferdelman
John C Fry
Andrew J Weightman
R John Parkes

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Porcupine Seabight Challenger Mound is the first carbonate mound to be drilled (approximately 270 m) and analyzed in detail microbiologically and biogeochemically. Two mound sites and a non-mound Reference site were analyzed with a range of molecular techniques [catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH), quantitative PCR (16S rRNA and functional genes, dsrA and mcrA), and 16S rRNA gene PCR-DGGE] to assess prokaryotic diversity, and this was compared with the distribution of total and culturable cell counts, radiotracer activity measurements and geochemistry. There was a significant and active prokaryotic community both within and beneath the carbonate mound. Although total cell numbers at certain depths were lower than the global average for other subseafloor sediments and prokaryotic activities were relatively low (iron and sulfate reduction, acetate oxidation, methanogenesis) they were significantly enhanced compared with the Reference site. In addition, there was some stimulation of prokaryotic activity in the deepest sediments (Miocene, > 10 Ma) including potential for anaerobic oxidation of methane activity below the mound base. Both Bacteria and Archaea were present, with neither dominant, and these were related to sequences commonly found in other subseafloor sediments. With an estimate of some 1600 mounds in the Porcupine Basin alone, carbonate mounds may represent a significant prokaryotic subseafloor habitat.

Indexed as

BiodiversitySoil MicrobiologyArchaeaBacteriaDNA, ArchaealDNA, BacterialDNA, RibosomalGenes, rRNAIn Situ Hybridization, FluorescenceMolecular Sequence DataOceans and SeasPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASequence Homology, Nucleic AcidSoilDNA, ArchaealDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SSoil

Identifiers

PMID18826439
PMCPMC3638347

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.