Evidence map›Paper›PMID 18824690›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder.

B S Pickard, H M Knight, R S Hamilton, D C Soares, R Walker, J K F Boyd, J Machell, A Maclean, K A McGhee, A Condie and 5 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 2 syntheses or guidelines pooled it, 64 citations in OpenAlex.

  1. Pooled it
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  12. Kainate Receptors Inhibit Glutamate Release Via Mobilization of Endocannabinoids in Striatal Direct Pathway Spiny Projection Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  13. Article
  14. Genetic Studies on the Tripartite Glutamate Synapse in the Pathophysiology and Therapeutics of Mood Disorders.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

B S PickardMedical Genetics, School of Clinical and Molecular Medicine, Molecular Medicine Centre, University of Edinburgh, Edinburgh EH4 2XU, United Kingdom. ben.pickard@ed.ac.uk
H M Knight
R S Hamilton
D C Soares
R Walker
J K F Boyd
J Machell
A Maclean
K A McGhee
A Condie
D J Porteous
D St Clair
I Davis
D H R Blackwood
W J Muir
Edinburgh Cancer Research · GBRoyal Edinburgh Hospital · GBUniversity of Oxford · GBUniversity of Aberdeen · GBUniversity of Edinburgh · GB

Funding

Chief Scientist OfficeMedical Research Council G0001292Medical Research Council G0100266Medical Research Council G0300401Wellcome TrustWellcome Trust 067413
6 · The paper itself

Abstract

Underactivity of the glutamatergic system is an attractive model for the pathophysiology of several major mental illnesses. We previously described a chromosome abnormality disrupting the kainate class ionotropic glutamate receptor gene, GRIK4/KA1, in an individual with schizophrenia and learning disability (mental retardation). We also demonstrated in a case-control study that two physically separated haplotypes within this gene were significantly associated with increased risk of schizophrenia and decreased risk of bipolar disorder, respectively. The latter protective haplotype was located at the 3' end of the gene. We now report the identification from carriers of the protective haplotype of a deletion variant within the 3' untranslated region of the gene. The deletion allele also was found to be negatively associated with bipolar disorder in both initial (P = 0.00000019) and replication (P = 0.0107) case-control studies. Expression studies indicated that deletion-carrying mRNA transcripts were relatively more abundant. We postulate that this may be a direct consequence of the differences in the RNA secondary structures predicted for the insertion and deletion alleles. These data suggest a mechanism whereby the genetic protective effect is mediated through increased kainate receptor expression.

Indexed as

INDEL MutationTranscription, Genetic3' Untranslated RegionsAllelesAmino Acid SequenceBipolar DisorderHaplotypesHeterozygoteHumansKainic Acid ReceptorsMolecular Sequence DataNucleic Acid ConformationPolymorphism, Single NucleotideSequence Deletion3' Untranslated RegionsGRIK4 protein, humanKainic Acid Receptors

Identifiers

PMID18824690
PMCPMC2567472
OpenAlexW2059349914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.