Evidence map›Paper›PMID 18824147›Full record

ArticleJournal of proteomics2008

Proteomic changes during intestinal cell maturation in vivo.

Jinsook Chang, Mark R Chance, Courtney Nicholas, Naseem Ahmed, Sandra Guilmeau, Marta Flandez, Donghai Wang, Do-Sun Byun, Shannon Nasser, Joseph M Albanese and 5 more

Open access · greenAbstract read
In one paragraph

Article in Journal of proteomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Exfoliated epithelial cell transcriptome reflects both small and large intestinal cell signatures in piglets.American journal of physiology. Gastrointestinal and liver physiology · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Exploring the villus.Gastroenterology and hepatology from bed to bench · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Shaping the intestinal brush border.The Journal of cell biology · 2014
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Jinsook ChangCenter for Proteomics, Case Western Reserve University, Cleveland, OH 44106, USA.
Mark R Chance
Courtney Nicholas
Naseem Ahmed
Sandra Guilmeau
Marta Flandez
Donghai Wang
Do-Sun Byun
Shannon Nasser
Joseph M Albanese
Georgia A Corner
Barbara G Heerdt
Andrew J Wilson
Leonard H Augenlicht
John M Mariadason
Montefiore Medical Center · USAlbert Einstein College of Medicine · USYeshiva University · USCase Western Reserve University · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
MOLECULAR-NUTRIENT INTERACTIONS IN INTESTINAL CANCERU54CA100926 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI AUGENLICHT, LEONARD H · 2003 to 2008
$9.7M
Maturation of Colon Cancer CellsR01CA100823 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI MARIADASON, JOHN M · 2003 to 2007
$1.2M
NCI NIH HHS CA 100823NCI NIH HHS P30 CA 013330NCI NIH HHS P30 CA013330NCI NIH HHS P30 CA 043703NCI NIH HHS P30 CA043703NCI NIH HHS R01 CA100823NCI NIH HHS U54 CA100926PHS HHS U54 100926
6 · The paper itself

Abstract

Intestinal epithelial cells undergo progressive cell maturation as they migrate along the crypt-villus axis. To determine molecular signatures that define this process, proteins differentially expressed between the crypt and villus were identified by 2D-DIGE and MALDI-MS. Forty-six differentially expressed proteins were identified, several of which were validated by immunohistochemistry. Proteins upregulated in the villus were enriched for those involved in brush border assembly and lipid uptake, established features of differentiated intestinal epithelial cells. Multiple proteins involved in glycolysis were also upregulated in the villus, suggesting increased glycolysis is a feature of intestinal cell differentiation. Conversely, proteins involved in nucleotide metabolism, and protein processing and folding were increased in the crypt, consistent with functions associated with cell proliferation. Three novel paneth cell markers, AGR2, HSPA5 and RRBP1 were also identified. Notably, significant correlation was observed between overall proteomic changes and corresponding gene expression changes along the crypt-villus axis, indicating intestinal cell maturation is primarily regulated at the transcriptional level. This proteomic profiling analysis identified several novel proteins and functional processes differentially induced during intestinal cell maturation in vivo. Integration of proteomic, immunohistochemical, and parallel gene expression datasets demonstrate the coordinated manner in which intestinal cell maturation is regulated.

Indexed as

ProteomicsAnimalsColoring AgentsElectrophoresis, Gel, Two-DimensionalEndoplasmic Reticulum Chaperone BiPEnzymesGene Expression RegulationIntestinal MucosaIntestine, SmallLipidsMiceProteinsRatsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSteroidsColoring AgentsEndoplasmic Reticulum Chaperone BiPEnzymesHspa5 protein, mouseLipidsProteinsSteroids

Identifiers

PMID18824147
PMCPMC2655360
OpenAlexW2081970367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.