ArticleBMC plant biology2008
Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense.
Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 85 citations in OpenAlex.
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- Evaluation of Cross-Species Transferability of SSR Markers inPlants (Basel, Switzerland) · 2020Article
- Omics Approaches for Engineering Wheat Production under Abiotic Stresses.International journal of molecular sciences · 2018Review
- Development of Novel Polymorphic EST-SSR Markers in Bailinggu (Pleurotus tuoliensis) for Crossbreeding.Genes · 2017Article
- Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stagein wheat.Scientific reports · 2017Article
- An analytical toolkit for polyploid willow discrimination.Scientific reports · 2016Article
- High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica.BMC plant biology · 2016Article
- Article
- Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.).BMC plant biology · 2015Article
- Development and characterization of polymorphic EST-SSR and genomic SSR markers for Tibetan annual wild barley.PloS one · 2014Article
- Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir.PloS one · 2014Article
- Transferability of molecular markers from major legumes to Lathyrus spp. for their application in mapping and diversity studies.Molecular biology reports · 2014Article
- Analysis of chromosomal polymorphism in barley (Hordeum vulgare L. ssp. vulgare) and between H. vulgare and H. chilense using three-color fluorescence in situ hybridization (FISH).Journal of applied genetics · 2013Article
- High-throughput genotyping of wheat-barley amphiploids utilising diversity array technology (DArT).BMC plant biology · 2013Article
- Combining bulk segregation analysis and microarrays for mapping of the pH trait in melon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Development and characterization of EST-SSR markers from Scapharca broughtonii and their transferability in Scapharca subcrenata and Tegillarca granosa.Molecules (Basel, Switzerland) · 2012Article
- Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers.BMC genomics · 2012Article
- Development of wild barley (Hordeum chilense)-derived DArT markers and their use into genetic and physical mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives.DNA research : an international journal for rapid publication of reports on genes and genomes · 2011Article
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Authors and funding
6 authors at 5 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundHordeum chilense, a native South American diploid wild barley, is a potential source of useful genes for cereal breeding. The use of this wild species to increase genetic variation in cereals will be greatly facilitated by marker-assisted selection. Different economically feasible approaches have been undertaken for this wild species with limited direct agricultural use in a search for suitable and cost-effective markers. The availability of Expressed Sequence Tags (EST) derived microsatellites or simple sequence repeat (SSR) markers, commonly called as EST-SSRs, for barley (Hordeum vulgare) represents a promising source to increase the number of genetic markers available for the H. chilense genome.
resultsAll of the 82 barley EST-derived SSR primer pairs tested for transferability to H. chilense amplified products of correct size from this species. Of these 82 barley EST-SSRs, 21 (26%) showed polymorphism among H. chilense lines. Identified polymorphic markers were used to test the transferability and polymorphism in other Poaceae family species with the aim of establishing H. chilense phylogenetic relationships. Triticum aestivum-H. chilense addition lines allowed us to determine the chromosomal localizations of EST-SSR markers and confirm conservation of the linkage group.
conclusionFrom the present study a set of 21 polymorphic EST-SSR markers have been identified to be useful for diversity analysis of H. chilense, related wild barleys like H. murinum, and for wheat marker-assisted introgression breeding. Across-genera transferability of the barley EST-SSR markers has allowed phylogenetic inference within the Triticeae complex.
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