Evidence map›Paper›PMID 18820744›Full record

ArticlePLoS neglected tropical diseases2008

Evidence for positive selection in putative virulence factors within the Paracoccidioides brasiliensis species complex.

Daniel R Matute, Lina M Quesada-Ocampo, Jason T Rauscher, Juan G McEwen

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Species boundaries in the human pathogen Paracoccidioides.Fungal genetics and biology : FG & B · 2017
    Article
  7. Article
  8. Genetic Stability and Evolution of theApplied and environmental microbiology · 2017
    Article
  9. Mediators of inflammation · 2017
    Review
  10. Article
  11. Article
  12. Epidemiology of Invasive Fungal Infections in Latin America.Current fungal infection reports · 2012
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel R MatuteDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA. danielricardomatute@gmail.com
Lina M Quesada-Ocampo
Jason T Rauscher
Juan G McEwen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Paracoccidioides brasiliensis is a dimorphic fungus that is the causative agent of paracoccidioidomycosis, the most important prevalent systemic mycosis in Latin America. Recently, the existence of three genetically isolated groups in P. brasiliensis was demonstrated, enabling comparative studies of molecular evolution among P. brasiliensis lineages. Thirty-two gene sequences coding for putative virulence factors were analyzed to determine whether they were under positive selection. Our maximum likelihood-based approach yielded evidence for selection in 12 genes that are involved in different cellular processes. An in-depth analysis of four of these genes showed them to be either antigenic or involved in pathogenesis. Here, we present evidence indicating that several replacement mutations in gp43 are under positive balancing selection. The other three genes (fks, cdc42 and p27) show very little variation among the P. brasiliensis lineages and appear to be under positive directional selection. Our results are consistent with the more general observations that selective constraints are variable across the genome, and that even in the genes under positive selection, only a few sites are altered. We present our results within an evolutionary framework that may be applicable for studying adaptation and pathogenesis in P. brasiliensis and other pathogenic fungi.

Indexed as

DNA, FungalDNA Mutational AnalysisGenes, FungalGenetic VariationGenome, FungalHumansLatin AmericaLikelihood FunctionsModels, GeneticParacoccidioidesParacoccidioidomycosisPhylogenySelection, GeneticVirulenceDNA, Fungal

Identifiers

PMID18820744
PMCPMC2553485

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.