Evidence map›Paper›PMID 18820232›Full record

ArticleBiophysical journal2008

Spatial diffusivity and availability of intracellular calmodulin.

Hugo Sanabria, Michelle A Digman, Enrico Gratton, M Neal Waxham

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Bound CaFrontiers in physiology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Development (Cambridge, England) · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Differential Regulation of PI(4,5)PFrontiers in molecular neuroscience · 2017
    Article
  15. Article
  16. Modulated CMOS camera for fluorescence lifetime microscopy.Microscopy research and technique · 2015
    Article
  17. Article
  18. Multiple spatial and kinetic subpopulations of CaMKII in spines and dendrites as resolved by single-molecule tracking PALM.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  19. Article
  20. Towards the Physics of Calcium Signalling in Plants.Plants (Basel, Switzerland) · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Hugo SanabriaDepartment of Neurobiology and Anatomy, University of Texas Health Science Center at Houston, Texas 77030, USA.
Michelle A Digman
Enrico Gratton
M Neal Waxham
The University of Texas Health Science Center at Houston · USFluor (United States) · USUniversity of California, Irvine · US

Funding

STRUCTUREU54GM064346 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI IMPERIALI, BARBARA · 2001 to 2010
$74.9M
Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
YEAST RIBOSOMAL STALK COMPOSITION IN VIVO BY TWO-PHOTON FCS AND PCH ANALYSISP41RR003155 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GRATTON, ENRICO · 1986 to 2011
$14.9M
STRUCTURE/FUNCTION OF CAM-KINASE IIR01NS026086 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WAXHAM, M. NEAL · 1988 to 2012
$4.2M
Structure and Function of CaM-Kinase IIR56NS026086 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WAXHAM, M. NEAL · 2008 to 2008
$375k
Confocal Imaging SystemS10RR022531 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BYRNE, JOHN H · 2007 to 2007
$269k
NCRR NIH HHS P41-RR03155NCRR NIH HHS S10 RR022531NCRR NIH HHS S10-RR022531NIDDK NIH HHS 2 R90 DK071054-03S1NIGMS NIH HHS P50 GM076516NIGMS NIH HHS P50-GM076516NIGMS NIH HHS U54 GM064346NIGMS NIH HHS U54 GM64346NINDS NIH HHS NS26086NINDS NIH HHS R01 NS026086NINDS NIH HHS R56 NS026086
6 · The paper itself

Abstract

Calmodulin (CaM) is the major pathway that transduces intracellular Ca2+ increases to the activation of a wide variety of downstream signaling enzymes. CaM and its target proteins form an integrated signaling network believed to be tuned spatially and temporally to control CaM's ability to appropriately pass signaling events downstream. Here, we report the spatial diffusivity and availability of CaM labeled with enhanced green fluorescent protein (eGFP)-CaM, at basal and elevated Ca2+,quantified by the novel fluorescent techniques of raster image scanning spectroscopy and number and brightness analysis. Our results show that in basal Ca2+ conditions cytoplasmic eGFP-CaM diffuses at a rate of 10 microm(2)/s, twofold slower than the noninteracting tracer, eGFP, indicating that a significant fraction of CaM is diffusing bound to other partners. The diffusion rate of eGFP-CaM is reduced to 7 microm(2)/s when a large (646 kDa) target protein Ca2+/CaM-dependent protein kinase II is coexpressed in the cells. In addition, the presence of Ca2+/calmodulin-dependent protein kinase II, which can bind up to 12 CaM molecules per holoenzyme, increases the stoichiometry of binding to an average of 3 CaMs per diffusive molecule. Elevating intracellular Ca2+ did not have a major impact on the diffusion of CaM complexes. These results present us with a model whereby CaM is spatially modulated by target proteins and support the hypothesis that CaM availability is a limiting factor in the network of CaM-signaling enzymes.

Indexed as

DiffusionBinding SitesCalciumCalcium-Calmodulin-Dependent Protein KinasesCalmodulinCell LineCell NucleusCell SurvivalCytoplasmGreen Fluorescent ProteinsHumansImmunohistochemistryIntracellular SpaceRestTime FactorsTransfectionCalciumCalcium-Calmodulin-Dependent Protein KinasesCalmodulinGreen Fluorescent Proteins

Identifiers

PMID18820232
PMCPMC2599858
OpenAlexW2116408247

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.