Evidence map›Paper›PMID 18818516›Full record

ArticleCell cycle (Georgetown, Tex.)2008

X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.

Andrey G Baranovskiy, Nigar D Babayeva, Victoria G Liston, Igor B Rogozin, Eugene V Koonin, Youri I Pavlov, Dmitry G Vassylyev, Tahir H Tahirov

Open access · hybridAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. POLD3 as Controller of Replicative DNA Repair.International journal of molecular sciences · 2024
    Review
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  12. Article
  13. Review
  14. Rev7 dimerization is important for assembly and function of the Rev1/Polζ translesion synthesis complex.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Andrey G BaranovskiyEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, Nebraska 68198-7696, USA.
Nigar D Babayeva
Victoria G Liston
Igor B Rogozin
Eugene V Koonin
Youri I Pavlov
Dmitry G Vassylyev
Tahir H Tahirov
University of Nebraska Medical Center · USNational Institutes of Health · USUniversity of Alabama at Birmingham · US

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
Transcription Regulation Through RNAP Secondary ChannelR01GM074840 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI VASSYLYEV, DMITRY G · 2005 to 2013
$4.1M
Molecular mechanisms of transcription elongationR01GM074252 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI VASSYLYEV, DMITRY G · 2005 to 2009
$2.4M
Structural Basis for Synergistic Gene Expression by Runx1 and Ets1 ProteinsR01GM082923 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TAHIROV, TAHIR H · 2008 to 2012
$1.5M
Intramural NIH HHSNCI NIH HHS P30 CA036727NCI NIH HHS P30CA036727NIGMS NIH HHS GM74252NIGMS NIH HHS GM74840NIGMS NIH HHS R01 GM074252NIGMS NIH HHS R01 GM074840NIGMS NIH HHS R01 GM082923
6 · The paper itself

Abstract

The eukaryotic DNA polymerase delta (Pol delta) participates in genome replication, homologous recombination, DNA repair and damage tolerance. Regulation of the plethora of Pol delta functions depends on the interaction between the second (p50) and third (p66) non-catalytic subunits. We report the crystal structure of p50*p66(N) complex featuring oligonucleotide binding and phosphodiesterase domains in p50 and winged helix-turn-helix N-terminal domain in p66. Disruption of the interaction between the yeast orthologs of p50 and p66 by strategic amino acid changes leads to cold-sensitivity, sensitivity to hydroxyurea and to reduced UV mutagenesis, mimicking the phenotypes of strains where the third subunit of Pol delta is absent. The second subunits of all B family replicative DNA polymerases in archaea and eukaryotes, except Pol delta, share a three-domain structure similar to p50*p66(N), raising the possibility that a portion of the gene encoding p66 was derived from the second subunit gene relatively late in evolution.

Indexed as

Amino Acid SequenceBinding SitesCrystallography, X-RayDNA Polymerase IIIHumansModels, MolecularMolecular Sequence DataProtein Structure, TertiaryProtein SubunitsSequence AlignmentDNA Polymerase IIIPOLD3 protein, humanProtein Subunits

Identifiers

PMID18818516
PMCPMC2605013
OpenAlexW2096640675

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.