ArticleCurrent genetics2008
The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus.
Article in Current genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 44 citations in OpenAlex.
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- Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum.Scientific reports · 2017Article
- The lncRNA RZE1 Controls Cryptococcal Morphological Transition.PLoS genetics · 2015Article
- Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in A. flavus in response to temperature.Scientific reports · 2015Article
- Genome analysis of rice-blast fungus Magnaporthe oryzae field isolates from southern India.Genomics data · 2015Article
- The mirror RNA expression pattern in human tissues.Precision medicine · 2015Article
- Aspergillus flavus infection induces transcriptional and physical changes in developing maize kernels.Frontiers in microbiology · 2014Article
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- Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters.BMC genomics · 2013Article
- Localization, morphology and transcriptional profile of Aspergillus flavus during seed colonization.Molecular plant pathology · 2013Article
- Ustilago maydis natural antisense transcript expression alters mRNA stability and pathogenesis.Molecular microbiology · 2013Article
- Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max).BMC genomics · 2013Article
- The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.PLoS genetics · 2013Article
- Generation and analysis of the expressed sequence tags from the mycelium of Ganoderma lucidum.PloS one · 2013Article
- Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera.BMC genomics · 2010Article
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Naturally occurring Antisense Transcripts (NATs) compose an emerging group of regulatory RNAs. These regulatory elements appear in all organisms examined, but little is known about global expression of NATs in fungi. Analysis of currently available EST sequences suggests that 352 cis NATs are present in Aspergillus flavus. An Affymetrix GeneChip microarray containing probes for these cis NATs, as well as all predicted genes in A. flavus, allowed a whole genome expression analysis of these elements in response to two ecologically important temperatures for the fungus. RNA expression analysis showed that 32 NATs and 2,709 genes were differentially expressed between 37 degrees C, the optimum temperature for growth, and 28 degrees C, the conducive temperature for the biosynthesis of aflatoxin (AF) and many other secondary metabolites. These NATs correspond to sense genes with diverse functions including transcription initiation, carbohydrate processing and binding, temperature sensitive morphogenesis, and secondary metabolism. This is the first report of a whole genome transcriptional analysis of NAT expression in a fungus.
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