Evidence map›Paper›PMID 18813905›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009

The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae).

Rex Brennan, Linzi Jorgensen, Sandra Gordon, Ken Loades, Christine Hackett, Joanne Russell

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 44 citations in OpenAlex.

  1. De Novo Transcriptome Analysis ofInternational journal of molecular sciences · 2022
    Article
  2. An Effective Method ofPlants (Basel, Switzerland) · 2022
    Article
  3. Putative Genes ofPlants (Basel, Switzerland) · 2022
    Article
  4. Article
  5. Quantitative trait loci mapping of polyphenol metabolites in blackcurrant (Ribes nigrum L.).Metabolomics : Official journal of the Metabolomic Society · 2020
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rex BrennanScottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. rex.brennan@scri.ac.uk
Linzi Jorgensen
Sandra Gordon
Ken Loades
Christine Hackett
Joanne Russell
University of Dundee · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gall mite (Cecidophyopsis ribis) is the most serious pest of blackcurrant (Ribes nigrum L.), causing the damaging condition known as 'big bud' and also transmitting blackcurrant reversion virus (BRV) within and between plantations. The identification of resistant germplasm is at present a time-consuming and expensive process, dependent on field infestation plots. Resistance based on gene Ce introgressed from gooseberry has been used in UK breeding programmes for blackcurrant. Using a bulked segregant analysis, 90 AFLP primer combinations were screened and a linkage map constructed around the resistance locus controlled by Ce. Sixteen of the primer combinations produced a fragment in the resistant bulked progeny and the gall mite-resistant parent, but not in the susceptible bulked progeny and parent; subsequent testing on individual progeny identified an AFLP fragment closely linked to gall mite resistance. This fragment, designated E41M88-280, was converted to a PCR-based marker based on sequence-specific primers, amplifying only in resistant individuals. Validation of this marker across a range of susceptible and resistant blackcurrant germplasm with different genetic backgrounds confirmed its reliability in the identification of mite-resistant germplasm containing gene Ce. The conversion of an AFLP fragment to a sequence-based PCR marker simplifies its application and therefore increases its utility for selection of mite-resistant germplasm in high-throughput breeding programmes for blackcurrant.

Indexed as

MitesAmplified Fragment Length Polymorphism AnalysisAnimalsChromosome MappingGenetic LinkageGenetic MarkersImmunity, InnatePlant DiseasesPolymerase Chain ReactionRibesGenetic Markers

Identifiers

PMID18813905
OpenAlexW2017066033

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.