Evidence map›Paper›PMID 18813342›Full record

ArticlePloS one2008

Protein microarray on-demand: a novel protein microarray system.

Deb K Chatterjee, Kalavathy Sitaraman, Cassio Baptista, James Hartley, Thomas M Hill, David J Munroe

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Deb K ChatterjeeProtein Expression Laboratory, SAIC-Frederick, Inc., NCI-Frederick, Frederick, Maryland, USA. chatterjee@mail.ncifcrf.gov
Kalavathy Sitaraman
Cassio Baptista
James Hartley
Thomas M Hill
David J Munroe
Science Applications International Corporation (United States) · USProtein Express (United States) · USUniversity of North Dakota · US

Funding

NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

We describe a novel, simple and low-cost protein microarray strategy wherein the microarrays are generated by printing expression ready plasmid DNAs onto slides that can be converted into protein arrays on-demand. The printed expression plasmids serve dual purposes as they not only direct the synthesis of the protein of interest; they also serve to capture the newly synthesized proteins through a high affinity DNA-protein interaction. To accomplish this we have exploited the high-affinity binding (approximately 3-7 x 10 (-13) M) of E. coli Tus protein to Ter, a 20 bp DNA sequence involved in the regulation of E. coli DNA replication. In our system, each protein of interest is synthesized as a Tus fusion protein and each expression construct directing the protein synthesis contains embedded Ter DNA sequence. The embedded Ter sequence functions as a capture reagent for the newly synthesized Tus fusion protein. This "all DNA" microarray can be converted to a protein microarray on-demand without need for any additional capture reagent.

Indexed as

Bacterial ProteinsBase SequenceComputational BiologyDNA ReplicationEscherichia coliEscherichia coli ProteinsGreen Fluorescent ProteinsModels, GeneticMolecular Sequence DataOligonucleotide Array Sequence AnalysisPlasmidsProtein Array AnalysisProtein BindingProtein Interaction MappingRecombinant Fusion ProteinsBacterial ProteinsEscherichia coli ProteinsGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID18813342
PMCPMC2533396
OpenAlexW1968051494

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.