Evidence map›Paper›PMID 18812508›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle.

Eric A Welsh, Michelle Liberton, Jana Stöckel, Thomas Loh, Thanura Elvitigala, Chunyan Wang, Aye Wollam, Robert S Fulton, Sandra W Clifton, Jon M Jacobs and 6 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 168 citations in OpenAlex.

  1. Article
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  9. Proteomic analysis of unicellular cyanobacteriumbioRxiv : the preprint server for biology · 2024
    Article
  10. Review
  11. Research progress on the microbiota in bladder cancer tumors.Frontiers in cellular and infection microbiology · 2024
    Review
  12. Review
  13. Article
  14. Introduction to Cyanobacteria.Advances in biochemical engineering/biotechnology · 2023
    Article
  15. A novel salt- and organic solvent-tolerant phosphite dehydrogenase fromFrontiers in bioengineering and biotechnology · 2023
    Article
  16. Diurnally dynamic iron allocation promotes NComputational and structural biotechnology journal · 2023
    Article
  17. Article
  18. Review
  19. Review
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Eric A WelshDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Michelle Liberton
Jana Stöckel
Thomas Loh
Thanura Elvitigala
Chunyan Wang
Aye Wollam
Robert S Fulton
Sandra W Clifton
Jon M Jacobs
Rajeev Aurora
Bijoy K Ghosh
Louis A Sherman
Richard D Smith
Richard K Wilson
Himadri B Pakrasi
Washington University in St. Louis · USPacific Northwest National Laboratory · USPurdue University West Lafayette · USSaint Louis University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unicellular cyanobacteria have recently been recognized for their contributions to nitrogen fixation in marine environments, a function previously thought to be filled mainly by filamentous cyanobacteria such as Trichodesmium. To begin a systems level analysis of the physiology of the unicellular N(2)-fixing microbes, we have sequenced to completion the genome of Cyanothece sp. ATCC 51142, the first such organism. Cyanothece 51142 performs oxygenic photosynthesis and nitrogen fixation, separating these two incompatible processes temporally within the same cell, while concomitantly accumulating metabolic products in inclusion bodies that are later mobilized as part of a robust diurnal cycle. The 5,460,377-bp Cyanothece 51142 genome has a unique arrangement of one large circular chromosome, four small plasmids, and one linear chromosome, the first report of a linear element in the genome of a photosynthetic bacterium. On the 429,701-bp linear chromosome is a cluster of genes for enzymes involved in pyruvate metabolism, suggesting an important role for the linear chromosome in fermentative processes. The annotation of the genome was significantly aided by simultaneous global proteomic studies of this organism. Compared with other nitrogen-fixing cyanobacteria, Cyanothece 51142 contains the largest intact contiguous cluster of nitrogen fixation-related genes. We discuss the implications of such an organization on the regulation of nitrogen fixation. The genome sequence provides important information regarding the ability of Cyanothece 51142 to accomplish metabolic compartmentalization and energy storage, as well as how a unicellular bacterium balances multiple, often incompatible, processes in a single cell.

Indexed as

Genome, BacterialBase SequenceChromosomes, BacterialCyanotheceEnergy MetabolismFermentationGene OrderMolecular Sequence DataNitrogen FixationProteomicsPyruvic AcidSequence Analysis, DNAPyruvic Acid

Identifiers

PMID18812508
PMCPMC2567498
OpenAlexW2098146748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.