Evidence map›Paper›PMID 18812501›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.

R Brueggeman, A Druka, J Nirmala, T Cavileer, T Drader, N Rostoks, A Mirlohi, H Bennypaul, U Gill, D Kudrna and 7 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 151 citations in OpenAlex.

  1. Meta-QTLs for multiple disease resistance involving three rusts in common wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  15. Identification of aInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 11 institutions in 6 countries.

R BrueggemanDepartment of Crop and Soil Science, Washington State University, Pullman, WA 99164, USA.
A Druka
J Nirmala
T Cavileer
T Drader
N Rostoks
A Mirlohi
H Bennypaul
U Gill
D Kudrna
C Whitelaw
A Kilian
F Han
Y Sun
K Gill
B Steffenson
A Kleinhofs
Washington State University · USCommonwealth Scientific and Industrial Research Organisation · AUIsfahan University of Technology · IRMonsanto (United States) · USNational University of Ireland, Maynooth · IEPioneer Hi-Bred · USUniversity of Arizona · USUniversity of Idaho · USUniversity of Latvia · LVUniversity of Minnesota · USUniversity of Prince Edward Island · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We isolated the barley stem rust resistance genes Rpg5 and rpg4 by map-based cloning. These genes are colocalized on a 70-kb genomic region that was delimited by recombination. The Rpg5 gene consists of an unusual structure encoding three typical plant disease resistance protein domains: nucleotide-binding site, leucine-rich repeat, and serine threonine protein kinase. The predicted RPG5 protein has two putative transmembrane sites possibly involved in membrane binding. The gene is expressed at low but detectable levels. Posttranscriptional gene silencing using VIGS resulted in a compatible reaction with a normally incompatible stem rust pathogen. Allele sequencing also validated the candidate Rpg5 gene. Allele and recombinant sequencing suggested that the probable rpg4 gene encoded an actin depolymerizing factor-like protein. Involvement of actin depolymerizing factor genes in nonhost resistance has been documented, but discovery of their role in gene-for-gene interaction would be novel and needs to be further substantiated.

Indexed as

Genes, PlantBinding SitesCloning, MolecularFungiGene SilencingHordeumLeucineNucleotidesPhysical Chromosome MappingPlant DiseasesPlant ProteinsPlant StemsProtein KinasesProtein Structure, TertiaryLeucineNucleotidesPlant ProteinsProtein Kinases

Identifiers

PMID18812501
PMCPMC2567477
OpenAlexW1973875710

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.