ArticleNucleic acids research2009
GabiPD: the GABI primary database--a plant integrative 'omics' database.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed.
- Identification of Novel Associations of Candidate Genes with Resistance to Late Blight inFrontiers in plant science · 2017Article
- Characterization of the caleosin gene family in the Triticeae.BMC genomics · 2014Article
- BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower.BMC genomics · 2013Article
- Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles.BMC plant biology · 2012Article
- GabiPD - The GABI Primary Database integrates plant proteomic data with gene-centric information.Frontiers in plant science · 2012Article
- A case study for efficient management of high throughput primary lab data.BMC research notes · 2011Article
- From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).BMC plant biology · 2011Article
- Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana.BMC genomics · 2010Article
- Omics meet networks - using systems approaches to infer regulatory networks in plants.Current opinion in plant biology · 2010Review
- Documentation system for plant transformation service and research.Plant methods · 2010Article
- PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update.Nucleic acids research · 2010Article
- A high-resolution map of the Grp1 locus on chromosome V of potato harbouring broad-spectrum resistance to the cyst nematode species Globodera pallida and Globodera rostochiensis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.BMC genomics · 2009Article
- Web-queryable large-scale data sets for hypothesis generation in plant biology.The Plant cell · 2009Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The GABI Primary Database, GabiPD (http://www.gabipd.org/), was established in the frame of the German initiative for Genome Analysis of the Plant Biological System (GABI). The goal of GabiPD is to collect, integrate, analyze and visualize primary information from GABI projects. GabiPD constitutes a repository and analysis platform for a wide array of heterogeneous data from high-throughput experiments in several plant species. Data from different 'omics' fronts are incorporated (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from 14 different model or crop species. We have developed the concept of GreenCards for text-based retrieval of all data types in GabiPD (e.g. clones, genes, mutant lines). All data types point to a central Gene GreenCard, where gene information is integrated from genome projects or NCBI UniGene sets. The centralized Gene GreenCard allows visualizing ESTs aligned to annotated transcripts as well as displaying identified protein domains and gene structure. Moreover, GabiPD makes available interactive genetic maps from potato and barley, and protein 2DE gels from Arabidopsis thaliana and Brassica napus. Gene expression and metabolic-profiling data can be visualized through MapManWeb. By the integration of complex data in a framework of existing knowledge, GabiPD provides new insights and allows for new interpretations of the data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.