Evidence map›Paper›PMID 18812321›Full record

ArticleThe Journal of biological chemistry2008

Degradation of a cytosolic protein requires endoplasmic reticulum-associated degradation machinery.

Meredith Boyle Metzger, Matthew J Maurer, Beverley M Dancy, Susan Michaelis

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed.

  1. Article
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  17. The role of Ubiquitination in Apoptosis and Necroptosis.Cell death and differentiation · 2022
    Review
  18. Review
  19. Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Meredith Boyle MetzgerDepartment of Cell Biology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Matthew J Maurer
Beverley M Dancy
Susan Michaelis

Funding

Trafficking of ABC proteins in yeastR01GM051508 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MICHAELIS, SUSAN D. · 1994 to 2010
$3.3M
NIGMS NIH HHS GM51508
6 · The paper itself

Abstract

Protein misfolding is monitored by a variety of cellular "quality control" systems. Endoplasmic reticulum (ER) quality control handles misfolded secretory and membrane proteins and is well characterized. However, less is known about the quality control of misfolded cytosolic proteins (CytoQC). To study CytoQC, we have employed a genetic system in Saccharomyces cerevisiae using a transplantable degron, CL1 (1). Attachment of CL1 to the cytosolic protein Ura3p destabilizes Ura3p, targeting it for rapid proteasomal degradation. We have performed a comprehensive analysis of Ura3p-CL1 degradation requirements. As shown previously, we observe that the ER-localized ubiquitin E2 (Ubc6p, Ubc7p, and Cue1p) and E3 (Doa10p) machinery involved in ER-associated degradation (ERAD) are also responsible for the degradation of the cytosolic substrate Ura3p-CL1. Importantly, we find that the cytosol/ER membrane-localized chaperones Ydj1p and Ssa1p, known to be necessary for the ERAD of membrane proteins with misfolded cytosolic domains, are also required for the ubiquitination and degradation of Ura3p-CL1. In addition, we show a role for the Cdc48p-Npl4p-Ufd1p complex in the degradation of Ura3p-CL1. When ubiquitination is blocked, a portion of Ura3p-CL1 is ER membrane-localized. Furthermore, access to the cytosolic face of the ER is required for the degradation of CL1 degron-containing proteins. The ER is distributed throughout the cytosol, and our data, together with previous studies, suggest that the cytosolic face of the ER membrane serves as a "platform" for the degradation of Ura3p-CL1, which may also be the case for other CytoQC substrates.

Indexed as

Gene Expression Regulation, FungalAdenosine TriphosphatasesCarrier ProteinsCytosolEndoplasmic ReticulumFungal ProteinsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsMembrane ProteinsModels, BiologicalMolecular ChaperonesPlasmidsProteasome Endopeptidase ComplexSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSolubilityAdenosine TriphosphatasesCarrier ProteinsCUE1 protein, S cerevisiaeFungal ProteinsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsMembrane ProteinsMolecular ChaperonesProteasome Endopeptidase ComplexSaccharomyces cerevisiae ProteinsSSA1 protein, S cerevisiaeUBC6 protein, S cerevisiaeUBC7 protein, S cerevisiaeUbiquitin-Conjugating EnzymesYDJ1 protein, S cerevisiae

Identifiers

PMID18812321
PMCPMC2583311

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.