Evidence map›Paper›PMID 18809682›Full record

ArticleThe Journal of biological chemistry2008

Interaction between the C termini of Alg13 and Alg14 mediates formation of the active UDP-N-acetylglucosamine transferase complex.

Xiao-Dong Gao, Satoru Moriyama, Nobuaki Miura, Neta Dean, Shin-Ichiro Nishimura

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. AnFrontiers in cell and developmental biology · 2022
    Article
  11. N-Glycosylation.Advances in experimental medicine and biology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Generation and degradation of free asparagine-linked glycans.Cellular and molecular life sciences : CMLS · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Xiao-Dong GaoGraduate School of Advanced Life Science, Frontier Research Center for Post-Genomic Science and Technology, Hokkaido University, N21, W11, Kita-Ku, Sapporo 001-0021, Japan.
Satoru Moriyama
Nobuaki Miura
Neta Dean
Shin-Ichiro Nishimura
Hokkaido University · JPStony Brook University · US

Funding

PROTEIN TARGETING TO THE YEAST GOLGIR01GM048467 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI DEAN, NETA · 1995 to 2006
$2.3M
NIGMS NIH HHS R01-GM048467
6 · The paper itself

Abstract

The second step of eukaryotic N-linked glycosylation in endoplasmic reticulum is catalyzed by an UDP-N-acetylglucosamine transferase that is comprised of two subunits, Alg13 and Alg14. The interaction between Alg13 and 14 is crucial for UDP-GlcNAc transferase activity, so formation of the Alg13/14 complex is likely to play a key role in the regulation of N-glycosylation. Using a combination of bioinformatics and molecular biological methods, we have undertaken a functional analysis of yeast Alg13 and Alg14 proteins to elucidate the mechanism of their interaction. Our mutational studies demonstrated that a short C-terminal alpha-helix of Alg13 is required for interaction with Alg14 and for enzyme activity. Electrostatic surface views of the modeled Alg13/14 complex suggest the presence of a hydrophobic cleft in Alg14 that provides a pocket for the Alg13 C-terminal alpha-helix. Co-immunoprecipitation assays confirmed the C-terminal three amino acids of Alg14 are required for maintaining the integrity of Alg13/Alg14 complex, and this depends on their hydrophobicity. Modeling studies place these three Alg14 residues at the entrance of the hydrophobic-binding pocket, suggesting their role in the stabilization of the interaction between the C termini of Alg13 and Alg14. Together, these results demonstrate that formation of this hetero-oligomeric complex is mediated by a short C-terminal alpha-helix of Alg13 in cooperation with the last three amino acids of Alg14. In addition, deletion of the N-terminal beta-strand of Alg13 caused the destruction of protein, indicating the structural importance of this region in protein stability.

Indexed as

Amino Acid SequenceAnimalsGlycosylationHumansMagnetic Resonance SpectroscopyMolecular Sequence DataN-AcetylglucosaminyltransferasesProtein BindingProtein ConformationProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidStatic ElectricityAlg13 protein, S cerevisiaeAlg14 protein, S cerevisiaeN-AcetylglucosaminyltransferasesSaccharomyces cerevisiae ProteinsUDP-N-acetylglucosamine transferase

Identifiers

PMID18809682
PMCPMC2583287
OpenAlexW2094910119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.