ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2008
Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
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45 citing papers in PubMed.
- Genetic Mapping of a QTL Controlling Fruit Size in Melon (Plants (Basel, Switzerland) · 2025Article
- Melon diversity on the Silk Road by molecular phylogenetic analysis in Kazakhstan melons.Breeding science · 2023Article
- Thorough Characterization ofFoods (Basel, Switzerland) · 2023Article
- QTLs and candidate genes analyses for fruit size under domestication and differentiation in melon (Cucumis melo L.) based on high resolution maps.BMC plant biology · 2021Article
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- Fine Mapping of Lycopene Content and Flesh Color Related Gene and Development of Molecular Marker-Assisted Selection for Flesh Color in Watermelon (Frontiers in plant science · 2019Article
- Cross-species transferability of EST-SSR markers developed from the transcriptome of Melilotus and their application to population genetics research.Scientific reports · 2017Article
- Genome-Wide Single Nucleotide Polymorphism Discovery and the Construction of a High-Density Genetic Map for Melon (Frontiers in plant science · 2017Article
- Article
- Mapping quantitative trait loci for fruit traits and powdery mildew resistance in melon (Cucumis melo).Botanical studies · 2016Article
- A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits.BMC plant biology · 2016Article
- Article
- Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing.Scientific reports · 2016Article
- A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species.Horticulture research · 2016Article
- Chiba Tendril-Less locus determines tendril organ identity in melon (Cucumis melo L.) and potentially encodes a tendril-specific TCP homolog.Journal of plant research · 2015Article
- Microsatellite analysis of genetic relationships between wild and cultivated melons in Northwest and Central China.Molecular biology reports · 2014Article
- Development of SSR markers by next-generation sequencing of Korean landraces of chamoe (Cucumis melo var. makuwa).Molecular biology reports · 2013Article
- SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Three EST-SSR markers associated with QTL for the growth of the clam Meretrix meretrix revealed by selective genotyping.Marine biotechnology (New York, N.Y.) · 2013Article
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9 authors.
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Abstract
We report the development of 158 primer pairs flanking SSR motifs in genomic (gSSR) and EST (EST-SSR) melon sequences, all yielding polymorphic bands in melon germplasm, except one that was polymorphic only in Cucurbita species. A similar polymorphism level was found among EST-SSRs and gSSRs, between dimeric and trimeric EST-SSRs, and between EST-SSRs placed in the open reading frame or any of the 5'- or 3'-untranslated regions. Correlation between SSR length and polymorphism was only found for dinucleotide EST-SSRs located within the untranslated regions, but not for trinucleotide EST-SSRs. Transferability of EST-SSRs to Cucurbita species was assayed and 12.7% of the primer pairs amplified at least in one species, although only 5.4% were polymorphic. A set of 14 double haploid lines from the cross between the cultivar "Piel de Sapo" and the accession PI161375 were selected for the bin mapping approach in melon. One hundred and twenty-one SSR markers were newly mapped. The position of 46 SSR loci was also verified by genotyping the complete population. A final bin-map was constructed including 80 RFLPs, 212 SSRs, 3 SNPs and the Nsv locus, distributed in 122 bins with an average bin length of 10.2 cM and a maximum bin length of 33 cM. Map density was 4.2 cM/marker or 5.9 cM/SSR.
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