Evidence map›Paper›PMID 18805972›Full record

ArticleJournal of bacteriology2008

Regulation of the Salmonella enterica std fimbrial operon by DNA adenine methylation, SeqA, and HdfR.

Marcello Jakomin, Daniela Chessa, Andreas J Bäumler, Josep Casadesús

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. TheFEMS microbes · 2026
    Article
  3. Article
  4. Article
  5. Integration of themBio · 2022
    Article
  6. DNA Methylation in Prokaryotes.Advances in experimental medicine and biology · 2022
    Article
  7. Changes in the genomes and methylomes of threeFrontiers in microbiology · 2022
    Article
  8. Article
  9. The bacterial epigenome.Nature reviews. Microbiology · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Marcello JakominDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Apartado 1095, E-41080 Sevilla, Spain.
Daniela Chessa
Andreas J Bäumler
Josep Casadesús
Universidad de Sevilla · ESUniversity of California, Davis · US

Funding

Virulence Factors of SalmonellaR01AI044170 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI BAUMLER, ANDREAS J · 1999 to 2022
$8.5M
Analysis of Salmonella typhimurium Fimbrial AntigensR01AI040124 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI BAUMLER, ANDREAS J · 2002 to 2011
$3.6M
Salmonella Host interactionsR37AI044170 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Andreas J Baumler, Renee M Tsolis · 2025 to 2026
$1.2M
Pathogenesis of S. Typhimurium bacteremiaR21AI079173 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BAUMLER, ANDREAS J · 2008 to 2009
$418k
S TYPHIMURIUM ADHESION TO PEYERS PATCHESR29AI040124 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI BAUMLER, ANDREAS J · 1997 to 2001
$207k
NIAID NIH HHS AI040124NIAID NIH HHS AI044170NIAID NIH HHS AI079173NIAID NIH HHS R01 AI040124NIAID NIH HHS R01 AI044170NIAID NIH HHS R21 AI079173NIAID NIH HHS R29 AI040124NIAID NIH HHS R37 AI044170
6 · The paper itself

Abstract

DNA adenine methylase (dam) mutants of Salmonella enterica serovar Typhimurium grown under laboratory conditions express the std fimbrial operon, which is tightly repressed in the wild type. Here, we show that uncontrolled production of Std fimbriae in S. enterica serovar Typhimurium dam mutants contributes to attenuation in mice, as indicated by the observation that an stdA dam strain is more competitive than a dam strain upon oral infection. Dam methylation appears to regulate std transcription, rather than std mRNA stability or turnover. A genetic screen for std regulators showed that the GATC-binding protein SeqA directly or indirectly represses std expression, while the poorly characterized yifA gene product serves as an std activator. YifA encodes a putative LysR-like protein and has been renamed HdfR, like its Escherichia coli homolog. Activation of std expression by HdfR is observed only in dam and seqA backgrounds. These data suggest that HdfR directly or indirectly activates std transcription. Since SeqA is unable to bind nonmethylated DNA, it is possible that std operon derepression in dam and seqA mutants may result from unconstrained HdfR-mediated activation of std transcription. Derepression of std in dam and seqA mutants of S. enterica occurs in only a fraction of the bacterial population, suggesting the occurrence of either bistable expression or phase variation.

Indexed as

OperonAdenineAnimalsBacterial ProteinsBlotting, WesternDNA MethylationFimbriae, BacterialFlow CytometryGene Expression Regulation, BacterialMiceMice, Inbred BALB CMutationReverse Transcriptase Polymerase Chain ReactionSalmonella typhimuriumSite-Specific DNA-Methyltransferase (Adenine-Specific)Transcription, GeneticAdenineBacterial ProteinsDam methyltransferaseSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID18805972
PMCPMC2576648
OpenAlexW2048325664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.