Evidence map›Paper›PMID 18803869›Full record

ArticleBMC genomics2008

The information highways of a biotechnological workhorse--signal transduction in Hypocrea jecorina.

Monika Schmoll

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 164 citations in OpenAlex.

  1. Article
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  5. Article
  6. Mechanism of ZnBiotechnology for biofuels and bioproducts · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. International journal of molecular sciences · 2022
    Review
  11. Article
  12. Article
  13. Understanding the Role ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Biotechnology for biofuels · 2019
    Article
  18. Article
  19. Review
  20. Role ofBiotechnology for biofuels · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Monika SchmollResearch Area of Gene Technology and Applied Biochemistry, Institute for Chemical Engineering, Vienna University of Technology, Wien, Austria. mschmoll@mail.zserv.tuwien.ac.at
TU Wien · AT

Funding

Austrian Science Fund FWF P 20004
6 · The paper itself

Abstract

backgroundThe ascomycete Hypocrea jecorina (anamorph Trichoderma reesei) is one of the most prolific producers of biomass-degrading enzymes and frequently termed an industrial workhorse. To compete for nutrients in its habitat despite its shortcoming in certain degradative enzymes, efficient perception and interpretation of environmental signals is indispensable. A better understanding of these signals as well as their transmission machinery can provide sources for improvement of biotechnological processes.

resultsThe genome of H. jecorina was analysed for the presence and composition of common signal transduction pathways including heterotrimeric G-protein cascades, cAMP signaling, mitogen activated protein kinases, two component phosphorelay systems, proteins involved in circadian rhythmicity and light response, calcium signaling and the superfamily of Ras small GTPases. The results of this survey are discussed in the context of current knowledge in order to assess putative functions as well as potential impact of alterations of the respective pathways.

conclusionImportant findings include an additional, bacterial type phospholipase C protein and an additional 6-4 photolyase. Moreover the presence of 4 RGS-(Regulator of G-protein Signaling) proteins and 3 GprK-type G-protein coupled receptors comprising an RGS-domain suggest a more complex posttranslational regulation of G-protein signaling than in other ascomycetes. Also the finding, that H. jecorina, unlike yeast possesses class I phosducins which are involved in phototransduction in mammals warrants further investigation. An alteration in the regulation of circadian rhythmicity may be deduced from the extension of both the class I and II of casein kinases, homologues of which are implicated in phosphorylation of FRQ in Neurospora crassa. On the other hand, a shortage in the number of the pathogenicity related PTH11-type G-protein coupled receptors (GPCRs) as well as a lack of microbial opsins was detected. Considering its efficient enzyme system for breakdown of cellulosic materials, it came as a surprise that H. jecorina does not possess a carbon sensing GPCR.

Indexed as

Signal TransductionAmino Acid SequenceFungal ProteinsGTP-Binding Protein alpha SubunitsHypocreaMolecular Sequence DataPhylogenyReceptors, G-Protein-CoupledFungal ProteinsGTP-Binding Protein alpha SubunitsReceptors, G-Protein-Coupled

Identifiers

PMID18803869
PMCPMC2566311
OpenAlexW1976784965

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.