Evidence map›Paper›PMID 18803400›Full record

ArticleBiochemistry2008

Structure of the S100A6 complex with a fragment from the C-terminal domain of Siah-1 interacting protein: a novel mode for S100 protein target recognition.

Young-Tae Lee, Yoana N Dimitrova, Gabriela Schneider, Whitney B Ridenour, Shibani Bhattacharya, Sarah E Soss, Richard M Caprioli, Anna Filipek, Walter J Chazin

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. The structural properties of full-length annexin A11.Frontiers in molecular biosciences · 2024
    Article
  3. S100A6 Protein-Expression and Function in Norm and Pathology.International journal of molecular sciences · 2023
    Review
  4. Were Ancestral Proteins Less Specific?Molecular biology and evolution · 2021
    Article
  5. Article
  6. Review
  7. Learning peptide recognition rules for a low-specificity protein.Protein science : a publication of the Protein Society · 2020
    Article
  8. Article
  9. S100 proteins as therapeutic targets.Biophysical reviews · 2018
    Review
  10. Article
  11. Article
  12. S100A6 protein: functional roles.Cellular and molecular life sciences : CMLS · 2017
    Review
  13. Article
  14. Article
  15. The potential role of CacyBP/SIP in tumorigenesis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Review
  16. Dimerization and phosphatase activity of calcyclin-binding protein/Siah-1 interacting protein: the influence of oxidative stress.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Article
  17. Article
  18. Article
  19. Article
  20. Structure of the S100A4/myosin-IIA complex.BMC structural biology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Young-Tae LeeDepartments of Biochemistry and Chemistry and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37232-8725, USA.
Yoana N Dimitrova
Gabriela Schneider
Whitney B Ridenour
Shibani Bhattacharya
Sarah E Soss
Richard M Caprioli
Anna Filipek
Walter J Chazin
Instytut Biologii Doświadczalnej im. Marcelego Nenckiego · PLNew York Structural Biology Center · USVanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Spatial Analysis of Molecules in Tissue using MALDI-MSR01GM058008 · NIGMS · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M · 1998 to 2015
$5.8M
Structural Biology of U-box E3 Ubiquitin LigasesR01GM075156 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2005 to 2013
$2.4M
S100 PROTEINS: STRUCTURAL BASIS OF FUNCTIONAL PROPERTIESR01GM062112 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2000 to 2009
$2.1M
Structure of calcyclin binding protein-S100A6 complexR03TW006005 · FIC · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J · 2002 to 2004
$112k
FIC NIH HHS R03 TW006005NCI NIH HHS P30 CA068485NCI NIH HHS P30 CA68485NCI NIH HHS T32 CA009582NCI NIH HHS T32 CA09582NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P50 ES00267NIGMS NIH HHS R01 GM058008NIGMS NIH HHS R01 GM062112NIGMS NIH HHS R01 GM075156NIGMS NIH HHS R01 GM58008NIGMS NIH HHS R01 GM62112NIGMS NIH HHS R01 GM75156PHS HHS 2 P04A 01030
6 · The paper itself

Abstract

S100A6 is a member of the S100 subfamily of EF-hand Ca (2+) binding proteins that has been shown to interact with calcyclin binding protein/Siah-1 interacting protein (CacyBP/SIP or SIP), a subunit of an SCF-like E3 ubiquitin ligase complex (SCF-TBL1) formed under genotoxic stress. SIP serves as a scaffold in this complex, linking the E2-recruiting module Siah-1 to the substrate-recruiting module Skp1-TBL1. A cell-based functional assay suggests that S100A6 modulates the activity of SCF-TBL1. The results from the cell-based experiments could be enhanced if it were possible to selectively inhibit S100A6-SIP interactions without perturbing any other functions of the two proteins. To this end, the structure of the S100A6-SIP complex was determined in solution by NMR and the strength of the interaction was characterized by isothermal titration calorimetry. In an initial step, the minimal S100A6 binding region in SIP was mapped to a 31-residue fragment (Ser189-Arg219) in the C-terminal domain. The structure of the S100A6-SIP(189-219) complex revealed that SIP(189-219) forms two helices, the first of which (Met193-Tyr200) interacts with S100A6 in a canonical binding mode. The second helix (Met207-Val216) lies over the S100A6 dimer interface, a mode of binding to S100A6 that has not previously been observed for any target bound to an S100 protein. A series of structure-based SIP mutations showed reduced S100A6 binding affinity, setting the stage for direct functional analysis of S100A6-SIP interactions.

Indexed as

Calcium-Binding ProteinsCalorimetryCell Cycle ProteinsCell LineHumansNuclear Magnetic Resonance, BiomolecularProtein BindingProtein ConformationS100 Calcium Binding Protein A6S100 ProteinsCACYBP protein, humanCalcium-Binding ProteinsCell Cycle ProteinsS100A6 protein, humanS100 Calcium Binding Protein A6S100 Proteins

Identifiers

PMID18803400
PMCPMC2666074
OpenAlexW2050755997

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.