Evidence map›Paper›PMID 18801706›Full record

ArticleClinical immunology (Orlando, Fla.)2008

Tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.

Keiichi Kodama, Atul J Butte, Remi J Creusot, Leon Su, Deqiao Sheng, Mark Hartnett, Hideyuki Iwai, Luis R Soares, C Garrison Fathman

Open access · greenAbstract read
In one paragraph

Article in Clinical immunology (Orlando, Fla.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
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  19. Fine mapping of type 1 diabetes regions Idd9.1 and Idd9.2 reveals genetic complexity.Mammalian genome : official journal of the International Mammalian Genome Society · 2013
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Keiichi KodamaDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University School of Medicine, 269 West Campus Drive, Stanford, CA 94305, USA.
Atul J Butte
Remi J Creusot
Leon Su
Deqiao Sheng
Mark Hartnett
Hideyuki Iwai
Luis R Soares
C Garrison Fathman
Stanford University · USAgilent Technologies (United States) · US

Funding

Virginia Mason/UCHSC Autoimmune Prevention CenterU19AI050864 · NIAID · UNIVERSITY OF COLORADO DENVER · PI HOLERS, VERNON MICHAEL · 2001 to 2011
$29.2M
Strategies for Prevention of AutoimmunityU19DK061934 · NIDDK · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2001 to 2005
$4.4M
NIAID NIH HHS U19 AI050864NIAID NIH HHS U19- AI050864NIDDK NIH HHS U19 DK061934NIDDK NIH HHS U19- DK61934
6 · The paper itself

Abstract

Whole genome oligo-microarrays were used to characterize age-dependent and tissue-specific changes in gene expression in pancreatic lymph nodes, spleen, and peripheral blood cells, obtained from up to 8 individual NOD mice at 6 different time points (1.5 to 20 weeks of age), compared to NOD.B10 tissue controls. "Milestone Genes" are genes whose expression was significantly changed (approximately 3 fold) as the result of splicing or changes in transcript level. Milestone Genes were identified among genes within type one diabetes (T1D) susceptibility regions (Idd). Milestone Genes showing uniform patterns of changes in expression at various time points were identified, but the patterns of distribution and kinetics of expression were unique to each tissue. Potential T1D candidate genes were identified among Milestone Genes within Idd regions and/or hierarchical clusters. These studies identified tissue- and age-specific changes in gene expression that may play an important role in the inductive or destructive events of T1D.

Indexed as

Gene Expression ProfilingAge FactorsAnimalsDiabetes Mellitus, Type 1FemaleMiceMice, Inbred NODMultigene FamilyOrgan Specificity

Identifiers

PMID18801706
PMCPMC2592195
OpenAlexW2036917525

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.