Evidence map›Paper›PMID 18799721›Full record

ArticleJournal of the American Society of Nephrology : JASN2009

Clonotype analysis of cytomegalovirus-specific cytotoxic T lymphocytes.

Nina Babel, Gordon Brestrich, Lukasz P Gondek, Arne Sattler, Marcin W Wlodarski, Nina Poliak, Nicole Bethke, Andreas Thiel, Markus H Hammer, Petra Reinke and 1 more

Abstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nina BabelExperimental Haematology and Hematopoiesis Section, Taussig Cancer Center, Cleveland Clinic Foundation, Cleveland, Ohio, USA. nina.babel@charite.de
Gordon Brestrich
Lukasz P Gondek
Arne Sattler
Marcin W Wlodarski
Nina Poliak
Nicole Bethke
Andreas Thiel
Markus H Hammer
Petra Reinke
Jaroslaw P Maciejewski

Funding

Molecular T Cell Repertoire in Aplastic AnemiaR01HL073429 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P · 2004 to 2007
$1.5M
TCR Diagnostics in LGL Leukemia and Immune CytopeniasR01CA113972 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2009
$1.5M
Training/Research Center-Bone Marrow Failure SyndromesK24HL077522 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2014
$1.2M
LASER SCANNING CONFOCAL MICROSCOPE: NEUROSCIENCES10RR019391 · NCRR · UNIVERSITY OF LOUISVILLE · PI EPSTEIN, PAUL N. · 2004 to 2004
$315k
NCI NIH HHS R01 CA113972NCI NIH HHS R01 CA113972-02NCRR NIH HHS S10 RR019391NCRR NIH HHS U54 RR019391-01NHLBI NIH HHS K24 HL077522NHLBI NIH HHS K24 HL077522-01A1NHLBI NIH HHS R01 HL073429NHLBI NIH HHS R01 HL073429-02
6 · The paper itself

Abstract

Cytotoxic T lymphocytes (CTL) control the replication of human cytomegalovirus (CMV). Previous studies assessed the clonotypic composition of CTL specific for individual immunodominant peptides within a certain HLA context. Such an approach has inherent limitations and may not assess the true clonal CTL response in vivo. Here, the clonotypic composition of CMV-specific CTL was determined in HLA-A2, CMV-seropositive kidney transplant recipients and healthy blood donors after stimulation of peripheral blood mononuclear cells with either a pp65 whole-peptide pool or a single immunodominant peptide. Even after stimulation with the whole peptide pool, CMV-specific CTL remained monoclonal or oligoclonal. Regarding intraindividual variation, the CDR3 motifs of the dominant clones were identical to those observed in CTL generated by the single immunodominant peptide. Sequencing of the CDR3 regions demonstrated significant interindividual variation; however, structural homology was observed for immunodominant clonotypes in three individuals. In conclusion, the highly focused T cell receptor repertoire found after stimulation with either a single immunodominant peptide or a peptide pool demonstrates a pivotal role for immunodominant epitopes in the generation of a clonal repertoire. These results provide new insights into the regulation of CMV clonal dominance and may contribute to the design and monitoring of adoptive immunotherapy.

Indexed as

Antibodies, MonoclonalAntigensCD8-Positive T-LymphocytesCytomegalovirusFlow CytometryHLA-A2 AntigenHLA AntigensHumansImmunotherapyImmunotherapy, AdoptiveKidney TransplantationPeptidesPhosphoproteinsReceptors, Antigen, T-CellT-Lymphocytes, CytotoxicViral Matrix ProteinsAntibodies, MonoclonalAntigenscytomegalovirus matrix protein 65kDaHLA-A2 AntigenHLA AntigensPeptidesPhosphoproteinsReceptors, Antigen, T-CellViral Matrix Proteins

Identifiers

PMID18799721
PMCPMC2637041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.