Evidence map›Paper›PMID 18799570›Full record

ArticleJournal of virology2008

Crystal structure of the avian reovirus inner capsid protein sigmaA.

Pablo Guardado-Calvo, Lorena Vazquez-Iglesias, José Martinez-Costas, Antonio L Llamas-Saiz, Guy Schoehn, Gavin C Fox, X Lois Hermo-Parrado, Javier Benavente, Mark J van Raaij

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Pablo Guardado-CalvoDepartamento de Bioquímica e Bioloxía Molecular, Facultade de Farmacia, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
Lorena Vazquez-Iglesias
José Martinez-Costas
Antonio L Llamas-Saiz
Guy Schoehn
Gavin C Fox
X Lois Hermo-Parrado
Javier Benavente
Mark J van Raaij
Commissariat à l'Énergie Atomique et aux Énergies Alternatives · FREuropean Synchrotron Radiation Facility · FRInstitut de Biologia Molecular de Barcelona · ESUniversidade de Santiago de Compostela · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avian reovirus, an important avian pathogen, expresses eight structural and four nonstructural proteins. The structural sigmaA protein is a major component of the inner capsid, clamping together lambdaA building blocks. sigmaA has also been implicated in the resistance of avian reovirus to the antiviral action of interferon by strongly binding double-stranded RNA in the host cell cytoplasm and thus inhibiting activation of the double-stranded RNA-dependent protein kinase. We have solved the structure of bacterially expressed sigmaA by molecular replacement and refined it using data to 2.3-A resolution. Twelve sigmaA molecules are present in the P1 unit cell, arranged as two short double helical hexamers. A positively charged patch is apparent on the surface of sigmaA on the inside of this helix and mutation of either of two key arginine residues (Arg155 and Arg273) within this patch abolishes double-stranded RNA binding. The structural data, together with gel shift assay, electron microscopy, and sedimentation velocity centrifugation results, provide evidence for cooperative binding of sigmaA to double-stranded RNA. The minimal length of double-stranded RNA required for sigmaA binding was observed to be 14 to 18 bp.

Indexed as

Amino Acid SequenceCrystallography, X-RayElectrophoretic Mobility Shift AssayMicroscopy, ElectronModels, BiologicalModels, MolecularMolecular Sequence DataMutation, MissenseOrthoreovirus, AvianProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryRecombinant ProteinsRNA-Binding ProteinsRNA, Double-StrandedRNA, ViralRecombinant ProteinsRNA-Binding ProteinsRNA, Double-StrandedRNA, ViralsigmaA protein, avian reovirusViral Core Proteins

Identifiers

PMID18799570
PMCPMC2573251
OpenAlexW2098160597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.