Evidence map›Paper›PMID 18798693›Full record

ArticlePLoS biology2008

Identification of COUP-TFII orphan nuclear receptor as a retinoic acid-activated receptor.

Schoen W Kruse, Kelly Suino-Powell, X Edward Zhou, Jennifer E Kretschman, Ross Reynolds, Clemens Vonrhein, Yong Xu, Liliang Wang, Sophia Y Tsai, Ming-Jer Tsai and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 205 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Frontiers in bioengineering and biotechnology · 2025
    Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Schoen W KruseLaboratory of Structural Sciences, Van Andel Research Institute, Grand Rapids, Michigan, USA.
Kelly Suino-Powell
X Edward Zhou
Jennifer E Kretschman
Ross Reynolds
Clemens Vonrhein
Yong Xu
Liliang Wang
Sophia Y Tsai
Ming-Jer Tsai
H Eric Xu
Baylor College of Medicine · USMichigan United · USVan Andel Institute · USGlobal Phasing (United Kingdom) · GBGrand Valley State University · US

Funding

TISSUE COACTIVATOR AND RECEPTOR EXPRESSION FINGERPRINTSP01DK059820 · NIDDK · INSTITUT DE GENETIQUE ET BIOLOGIE MOLECU · PI O'MALLEY, BERT W · 2001 to 2016
$23.1M
Structural Genomics of Orphan Nuclear ReceptorsR01DK071662 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2005 to 2017
$5.1M
MECHANISM OF ACTION OF COUP TRANSCRIPTION FACTORSR37DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1999 to 2008
$3.4M
A Nuclear Receptor COUP-TFII in Vascular Function: Angiogenesis and TumoirgenesisR01HL076448 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI TSAI, SOPHIA Y. · 2005 to 2012
$3.0M
MECHANISMS OF ACTION OF COUP TRANSCRIPTION FACTORSR01DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1992 to 2014
$2.2M
IN VITRO EXPRESSION OF HORMONE REGULATED GENES: INSULINR01HD017379 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1985 to 2011
$2.1M
Structure and Functions of Steroid Hormone ReceptorsR01DK066202 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2006 to 2010
$2.0M
Structural and functional studies of the nuclear receptor PPARgammaR01HL089301 · NHLBI · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2007 to 2010
$1.8M
IN VITRO EXPRESSION OF HORMONE-REGULATED GENESR37HD017379 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1995 to 2004
$1.6M
NHLBI NIH HHS HL076448NHLBI NIH HHS HL89301NHLBI NIH HHS R01 HL076448NHLBI NIH HHS R01 HL089301NICHD NIH HHS HD17379NICHD NIH HHS R01 HD017379NICHD NIH HHS R37 HD017379NIDDK NIH HHS DK45641NIDDK NIH HHS DK66202NIDDK NIH HHS DK71662NIDDK NIH HHS P01 DK059820NIDDK NIH HHS P01-DK59820NIDDK NIH HHS R01 DK045641NIDDK NIH HHS R01 DK066202NIDDK NIH HHS R01 DK071662NIDDK NIH HHS R37 DK045641
6 · The paper itself

Abstract

The chicken ovalbumin upstream promoter-transcription factors (COUP-TFI and II) make up the most conserved subfamily of nuclear receptors that play key roles in angiogenesis, neuronal development, organogenesis, cell fate determination, and metabolic homeostasis. Although the biological functions of COUP-TFs have been studied extensively, little is known of their structural features or aspects of ligand regulation. Here we report the ligand-free 1.48 A crystal structure of the human COUP-TFII ligand-binding domain. The structure reveals an autorepressed conformation of the receptor, where helix alpha10 is bent into the ligand-binding pocket and the activation function-2 helix is folded into the cofactor binding site, thus preventing the recruitment of coactivators. In contrast, in multiple cell lines, COUP-TFII exhibits constitutive transcriptional activity, which can be further potentiated by nuclear receptor coactivators. Mutations designed to disrupt cofactor binding, dimerization, and ligand binding, substantially reduce the COUP-TFII transcriptional activity. Importantly, retinoid acids are able to promote COUP-TFII to recruit coactivators and activate a COUP-TF reporter construct. Although the concentration needed is higher than the physiological levels of retinoic acids, these findings demonstrate that COUP-TFII is a ligand-regulated nuclear receptor, in which ligands activate the receptor by releasing it from the autorepressed conformation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCell LineChickensCOUP Transcription Factor IICrystallography, X-RayDimerizationFemaleHumansLigandsModels, MolecularMolecular Sequence DataProtein Structure, QuaternaryProtein Structure, TertiaryReceptors, Retinoic AcidCOUP Transcription Factor IILigandsNR2F2 protein, humanReceptors, Retinoic AcidTretinoin

Identifiers

PMID18798693
PMCPMC2535662
OpenAlexW1963851137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.