Evidence map›Paper›PMID 18797815›Full record

ArticleArchives of virology2008

MHC-I-restricted epitopes conserved among variola and other related orthopoxviruses are recognized by T cells 30 years after vaccination.

S T Tang, M Wang, K Lamberth, M Harndahl, M H Dziegiel, M H Claesson, S Buus, O Lund

Open access · greenAbstract read
In one paragraph

Article in Archives of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Classification of human leukocyte antigen (HLA) supertypes.Methods in molecular biology (Clifton, N.J.) · 2014
    Article
  3. Prediction of epitopes using neural network based methods.Journal of immunological methods · 2011
    Article
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  5. Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

S T TangCenter for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Lyngby, Denmark.
M Wang
K Lamberth
M Harndahl
M H Dziegiel
M H Claesson
S Buus
O Lund
University of Copenhagen · DKTechnical University of Denmark · DKCopenhagen University Hospital · DK

Funding

NIAID NIH HHS N01 AI040083PHS HHS HHSN266200400025CPHS HHS HHSN266200400083C
6 · The paper itself

Abstract

It is many years since the general population has been vaccinated against smallpox virus. Here, we report that human leukocyte antigen (HLA) class I restricted T cell epitopes can be recognized more than 30 years after vaccination. Using bioinformatic methods, we predicted 177 potential cytotoxic T lymphocyte epitopes. Eight epitopes were confirmed to stimulate IFN-gamma release by T cells in smallpox-vaccinated subjects. The epitopes were restricted by five supertypes (HLA-A1, -A2, -A24 -A26 and -B44). Significant T cell responses were detected against 8 of 45 peptides with an HLA class I affinity of K(D) less than or equal to 5 nM, whereas no T cell responses were detected against 60 peptides with an HLA affinity of K(D) more than 5 nM. All epitopes were fully conserved in seven variola, vaccinia and cowpox strains. Knowledge of the long-term response to smallpox vaccination may lead to a better understanding of poxvirus immunity and may aid in the development of new improved vaccines and diagnostic tools.

Indexed as

AdultAgedAnimalsEpitopes, T-LymphocyteFemaleHistocompatibility Antigens Class IHumansInterferon-gammaMaleMiddle AgedOrthopoxvirusSmallpox VaccineTime FactorsT-Lymphocytes, CytotoxicEpitopes, T-LymphocyteHistocompatibility Antigens Class IInterferon-gammaSmallpox Vaccine

Identifiers

PMID18797815
PMCPMC2784598
OpenAlexW2050859828

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.