Evidence map›Paper›PMID 18796636›Full record

ArticleThe Plant cell2008

MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins.

Sushma Tiwari, Reiner Schulz, Yoko Ikeda, Lindsay Dytham, Jaime Bravo, Lucille Mathers, Melissa Spielman, Plinio Guzmán, Rebecca J Oakey, Tetsu Kinoshita and 1 more

Abstract read
In one paragraph

Article in The Plant cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Review
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  11. Genome-wide screening and analysis of imprinted genes in rapeseed (Brassica napus L.) endosperm.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sushma TiwariDepartment of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom.
Reiner Schulz
Yoko Ikeda
Lindsay Dytham
Jaime Bravo
Lucille Mathers
Melissa Spielman
Plinio Guzmán
Rebecca J Oakey
Tetsu Kinoshita
Rod J Scott

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 071002
6 · The paper itself

Abstract

Parental imprinting is important for seed development, but few imprinted genes have been identified in plants. The four known imprinted genes in Arabidopsis thaliana encode transcriptional regulators. Here, we describe a novel imprinted gene, MATERNALLY EXPRESSED PAB C-TERMINAL (MPC), which encodes the C-terminal domain of poly(A) binding proteins (PABPs). PABPs play roles in mRNA stability and translation. MPC interacts with proteins that also interact with the C-terminal domain of typical PABPs, suggesting that MPC may regulate translation by modulating PABP activity. In the endosperm, MPC is expressed only from the maternal allele. Reduction of MPC expression affects seed development. In dna methyltransferase1 (met1) mutants, MPC is ectopically expressed, and the paternal allele is active in the endosperm. CGs in the 5' flanking region and gene body of MPC lose methylation in a met1 background. Both regions are required to confer imprinted reporter expression, suggesting that the gene body contains imprinting control region elements. In Arabidopsis, DEMETER (DME) activates expression of maternal alleles. MPC expression is reduced in flowers and seeds in a dme-4 mutant but only after fertilization in dme-1. We conclude that other factors along with DME promote MPC expression and that DME has indirect effects on imprinted gene expression in endosperm.

Indexed as

AllelesAmino Acid SequenceArabidopsisArabidopsis ProteinsBinding SitesGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMicroscopy, ConfocalMolecular Sequence DataPoly(A)-Binding ProteinsReverse Transcriptase Polymerase Chain ReactionSeedsSequence Homology, Amino AcidArabidopsis ProteinsPoly(A)-Binding Proteins

Identifiers

PMID18796636
PMCPMC2570725

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.