Evidence map›Paper›PMID 18796135›Full record

ArticleBMC genomics2008

Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia.

Claude Lamarre, Sergueï Sokol, Jean-Paul Debeaupuis, Christine Henry, Céline Lacroix, Philippe Glaser, Jean-Yves Coppée, Jean-Marie François, Jean-Paul Latgé

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 138 citations in OpenAlex.

  1. Temperature duringbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Biogenesis, germination, and pathogenesis ofMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  5. Article
  6. TheFrontiers in cellular and infection microbiology · 2024
    Article
  7. Accelerating the understanding ofCurrent research in microbial sciences · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Solid-state NMR molecular snapshots ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Microorganisms · 2021
    Article
  15. Article
  16. Article
  17. Fungal spores are future-proofed.Nature microbiology · 2021
    Article
  18. Review
  19. Nitrogen, Iron and Zinc Acquisition: Key Nutrients toJournal of fungi (Basel, Switzerland) · 2021
    Review
  20. Microbial Air Quality in Healthcare Facilities.International journal of environmental research and public health · 2021
    Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Claude LamarreUnité des Aspergillus, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France. mechant_boris@hotmail.com
Sergueï Sokol
Jean-Paul Debeaupuis
Christine Henry
Céline Lacroix
Philippe Glaser
Jean-Yves Coppée
Jean-Marie François
Jean-Paul Latgé
Institut Pasteur · FRCentre National de la Recherche Scientifique · FRLaboratoire d'Ingénierie des Systèmes Biologiques et des Procédés · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEstablishment of aspergillosis is depending upon the exit from dormancy and germination of the conidia of Aspergillus fumigatus in the lung. To gain an understanding of the molecular mechanisms underlying the early steps of conidial germination, we undertook a transcriptomic analysis using macroarrays constructed with PCR fragments from > 3,000 genes (around one third of the annotated A. fumigatus genome).

resultsMajor results of this analysis are the following: (i) conidia stored pre-packaged mRNAs transcripts (27% of genes have transcripts in the resting conidia; (ii) incubation at 37 degrees C in a nutritive medium induced up- and down-regulation of genes: 19% of the total number of genes deposited on the array were up-regulated whereas 22% of the genes with pre-packaged mRNA in the resting conidia were down-regulated; (iii) most modifications were seen during the first 30 min of germination whereas very little modification of gene expression occurred during the following hour; (iv) one-year old conidia and one-week old conidia behaved similarly at transcriptional level.

conclusionTranscriptomic data indicate that the exit from dormancy is associated with a shift from a fermentative metabolism to a respiratory metabolism as well as a trend toward immediate protein synthesis.

Indexed as

Gene Expression ProfilingAspergillus fumigatusOligonucleotide Array Sequence AnalysisRNA, MessengerSpores, FungalRNA, Messenger

Identifiers

PMID18796135
PMCPMC2556354
OpenAlexW2134384685

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.