Evidence map›Paper›PMID 18794360›Full record

ArticleMolecular and cellular biology2008

Drosophila maternal Hsp83 mRNA destabilization is directed by multiple SMAUG recognition elements in the open reading frame.

Jennifer L Semotok, Hua Luo, Ramona L Cooperstock, Angelo Karaiskakis, Heli K Vari, Craig A Smibert, Howard D Lipshitz

Erratum issuedAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Intracellular mRNA transport and localized translation.Nature reviews. Molecular cell biology · 2021
    Review
  9. Article
  10. Review
  11. Review
  12. Organizing the oocyte: RNA localization meets phase separation.Current topics in developmental biology · 2020
    Article
  13. Post-translational regulation of the maternal-to-zygotic transition.Cellular and molecular life sciences : CMLS · 2018
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Germ Line Versus Soma in the Transition from Egg to Embryo.Current topics in developmental biology · 2015
    Review
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors.

Jennifer L SemotokDepartment of Molecular Genetics, University of Toronto, Medical Sciences Building, Room 4384D, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada.
Hua Luo
Ramona L Cooperstock
Angelo Karaiskakis
Heli K Vari
Craig A Smibert
Howard D Lipshitz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SMAUG (SMG) is an RNA-binding protein that functions as a key component of a transcript degradation pathway that eliminates maternal mRNAs in the bulk cytoplasm of activated Drosophila melanogaster eggs. We previously showed that SMG destabilizes maternal Hsp83 mRNA by recruiting the CCR4-NOT deadenylase to trigger decay; however, the cis-acting elements through which this was accomplished were unknown. Here we show that Hsp83 transcript degradation is regulated by a major element, the Hsp83 mRNA instability element (HIE), which maps to a 615-nucleotide region of the open reading frame (ORF). The HIE is sufficient for association of a transgenic mRNA with SMG protein as well as for SMG-dependent destabilization. Although the Hsp83 mRNA is translated in the early embryo, we show that translation of the mRNA is not necessary for destabilization; indeed, the HIE functions even when located in an mRNA's 3' untranslated region. The Hsp83 mRNA contains eight predicted SMG recognition elements (SREs); all map to the ORF, and six reside within the HIE. Mutation of a single amino acid residue that is essential for SMG's interaction with SREs stabilizes endogenous Hsp83 transcripts. Furthermore, simultaneous mutation of all eight predicted SREs also results in transcript stabilization. A plausible model is that the multiple, widely distributed SREs in the ORF enable some SMG molecules to remain bound to the mRNA despite ribosome transit through any individual SRE. Thus, SMG can recruit the CCR4-NOT deadenylase to trigger Hsp83 mRNA degradation despite the fact that it is being translated.

Indexed as

Open Reading FramesRNA, Messenger, StoredRNA StabilityAnimalsBase SequenceDrosophila melanogasterDrosophila ProteinsFemaleHeat-Shock ProteinsMutationProtein BiosynthesisRepressor ProteinsRNA-Binding ProteinsTransgenesDrosophila ProteinsHeat-Shock ProteinsHsp83 protein, DrosophilaRepressor ProteinsRNA-Binding ProteinsRNA, Messenger, Storedsmg protein, Drosophila

Identifiers

PMID18794360
PMCPMC2573300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.