Evidence map›Paper›PMID 18794211›Full record

ArticleProtein science : a publication of the Protein Society2008

Physicochemical changes in phosphorylase kinase associated with its activation.

Weiya Liu, Timothy S Priddy, Gerald M Carlson

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Physicochemical changes in phosphorylase kinase induced by its cationic activator Mg(2+).Protein science : a publication of the Protein Society · 2013
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Weiya LiuDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, Kansas 66160, USA.
Timothy S Priddy
Gerald M Carlson
University of Kansas Medical Center · USUniversity of Kansas · US

Funding

SUBUNIT INTERACTIONS OF PHOSPHORYLASE KINASER01DK032953 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI CARLSON, GERALD M · 1986 to 2013
$4.6M
The Glycoside Hydrolase Activity of Phosphorylase KinaseR56DK032953 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI CARLSON, GERALD M · 2009 to 2014
$609k
NIDDK NIH HHS DK32953NIDDK NIH HHS R01 DK032953NIDDK NIH HHS R56 DK032953
6 · The paper itself

Abstract

Phosphorylase kinase (PhK) regulates glycogenolysis through its Ca(2+)-dependent phosphorylation and activation of glycogen phosphorylase. The activity of PhK increases dramatically as the pH is raised from 6.8 to 8.2 (denoted as upward arrow pH), but Ca(2+) dependence is retained. Little is known about the structural changes associated with PhK's activation by upward arrow pH and Ca(2+), but activation by both mechanisms is mediated through regulatory subunits of the (alphabetagammadelta)(4) PhK complex. In this study, changes in the structure of PhK induced by upward arrow pH and Ca(2+) were investigated using second derivative UV absorption, synchronous fluorescence, circular dichroism spectroscopy, and zeta potential analyses. The joint effects of Ca(2+) and upward arrow pH on the physicochemical properties of PhK were found to be interdependent, with their effects showing a strong inflection point at pH approximately 7.6. Comparing the properties of the conformers of PhK present under the condition where it would be least active (pH 6.8 - Ca(2+)) versus that where it would be most active (pH 8.2 + Ca(2+)), the joint activation by upward arrow pH and Ca(2+) is characterized by a relatively large increase in the content of sheet structure, a decrease in interactions between helix and sheet structures, and a dramatically less negative electrostatic surface charge. A model is presented that accounts for the interdependent activating effects of upward arrow pH and Ca(2+) in terms of the overall physicochemical properties of the four PhK conformers described herein, and published data corroborating the transitions between these conformers are tabulated.

Indexed as

AnimalsCalciumCircular DichroismEnzyme ActivationFemaleHydrogen-Ion ConcentrationPhosphorylase KinaseProtein Structure, SecondaryProtein Structure, TertiaryRabbitsSpectrometry, FluorescenceSpectrophotometry, UltravioletStatic ElectricitySurface PropertiesCalciumPhosphorylase Kinase

Identifiers

PMID18794211
PMCPMC2590917
OpenAlexW2128950417

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.