Evidence map›Paper›PMID 18794103›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2008

Gene expression profiling reveals similarities between the in vitro and in vivo responses of immune effector cells to IFN-alpha.

Jason M Zimmerer, Gregory B Lesinski, Amy S Ruppert, Michael D Radmacher, Carl Noble, Kari Kendra, Michael J Walker, William E Carson

Registry-linked trialOpen access · bronzeAbstract readComparative Study
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03117816 (Efficacy and Safety of Pegylated Proline Interferon Alpha 2b), which is not on this map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03117816 phase3completednot on this mapstarted 2017, after this paper: background citation

Efficacy and Safety of Pegylated Proline Interferon Alpha 2b (AOP2014) in Maintaining Deep Molecular Remissions in Patients With Chronic Myeloid Leukemia (CML) Who Discontinue ABL-Kinase Inhibitor Therapy - a Randomized Phase III, Multicenter Trial With Post-study Follow-up

TypeinterventionalSponsorPhilipps University MarburgRan2017 to 2022Enrolled214ConditionsChronic Myeloid Leukemia in RemissionArmsAOP2014 / Pegylated-Proline-interferon alpha-2b, Surveillance
3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Trial
  2. Gene regulatory and clinical effects of interferon β in patients with metastatic melanoma: a phase II trial.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2011
    Trial
  3. Article
  4. Article
  5. Review
  6. TLDc proteins: new players in the oxidative stress response and neurological disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Review
  7. Journal of virology · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Melanoma NOS1 expression promotes dysfunctional IFN signaling.The Journal of clinical investigation · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jason M ZimmererIntegrated Biological Sciences Graduate Program, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio 43210, USA.
Gregory B Lesinski
Amy S Ruppert
Michael D Radmacher
Carl Noble
Kari Kendra
Michael J Walker
William E Carson
Cancer Genetics (United States) · USThe Ohio State University · USGeneral Department of Preventive Medicine · VN

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
TWO SIGNAL REQUIREMENT FOR NATURAL KILLER IMMUNITYP01CA095426 · NCI · OHIO STATE UNIVERSITY · PI CALIGIURI, MICHAEL A · 2002 to 2016
$29.6M
University of Iowa Clinical and Translational Science Program (TL1)UL1RR025755 · NCRR · OHIO STATE UNIVERSITY · PI JACKSON, REBECCA D · 2008 to 2011
$26.3M
A Program of Immune-Based Treatments for CancerK24CA093670 · NCI · OHIO STATE UNIVERSITY · PI CARSON, WILLIAM E. · 2002 to 2012
$1.7M
SOCS proteins as inhibitors of immune surveillance in the melanoma microenvironmeK22CA134551 · NCI · OHIO STATE UNIVERSITY · PI LESINSKI, GREGORY B. · 2008 to 2010
$454k
NCI NIH HHS K22 CA134551NCI NIH HHS K24 CA093670NCI NIH HHS K24 CA93670NCI NIH HHS P01 CA095426NCI NIH HHS P01 CA95426-01A1NCI NIH HHS P30 CA016058NCI NIH HHS P30-CA16058NCRR NIH HHS UL1 RR025755
6 · The paper itself

Abstract

purposeThe precise molecular targets of IFN-alpha therapy in the context of malignant melanoma are unknown but seem to involve signal transducers and activators of transcription 1 signal transduction within host immune effector cells. We hypothesized that the in vitro transcriptional response of patient peripheral blood mononuclear cells (PBMC) to IFN-alpha would be similar to the in vivo response to treatment with high-dose IFN-alpha. EXPERIMENTAL

designThe gene expression profiles of PBMCs and immune cell subsets treated in vitro with IFN-alpha were evaluated, as were PBMCs obtained from melanoma patients receiving adjuvant IFN-alpha.

resultsTwenty-seven genes were up-regulated in PBMCs from normal donors after treatment with IFN-alpha in vitro for 18 hours (>2-fold, P < 0.001). A subset of these genes (in addition to others) was significantly expressed in IFN-alpha-treated T cells, natural killer cells, and monocytes. Analysis of gene expression within PBMCs from melanoma patients (n = 13) receiving high-dose IFN-alpha-2b (20 MU/m(2) i.v.) revealed significant up-regulation (>2-fold) of 21 genes (P < 0.001). Also, the gene expression profile of in vitro IFN-alpha-stimulated patient PBMCs was similar to that of PBMCs obtained from the same patient after IFN-alpha therapy.

conclusionsThis report is the first to describe the transcriptional response of T cells, natural killer cells, and monocytes to IFN-alpha and characterize the transcriptional profiles of PBMCs from melanoma patients undergoing IFN-alpha immunotherapy. In addition, it was determined that microarray analysis of patient PBMCs after in vitro stimulation with IFN-alpha may be a useful predictor of the in vivo response of immune cells to IFN-alpha immunotherapy.

Indexed as

Blood DonorsFemaleGene Expression ProfilingHumansInterferon-alphaInterferon alpha-2Killer Cells, NaturalLeukocytes, MononuclearMaleMelanomaMicroarray AnalysisMonocytesRecombinant ProteinsT-LymphocytesTranscriptional ActivationUp-RegulationInterferon-alphaInterferon alpha-2Recombinant Proteins

Identifiers

PMID18794103
PMCPMC2762274
OpenAlexW2121990521

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.