Evidence map›Paper›PMID 18793761›Full record

ArticleBiochimica et biophysica acta2008

Detecting the active conformation of calpain with calpastatin-based reagents.

Dorothy E Croall, Lisa M Vanhooser, Robert E Cashon

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dorothy E Croall5735 Hitchner Hall, Department of Biochemistry, Microbiology and Molecular Biology, University of Maine, Orono, Maine 04469-5375, USA. dorothy.croall@umit.maine.edu
Lisa M Vanhooser
Robert E Cashon
University of Maine · US

Funding

Calpains in Neurodegeneration: Developing a BiosensorR15NS052270 · NINDS · UNIVERSITY OF MAINE ORONO · PI CROALL, DOROTHY E · 2005 to 2005
$217k
NINDS NIH HHS R15 NS052270
6 · The paper itself

Abstract

The specific, calcium-dependent, high affinity interaction between calpain and its endogenous inhibitor calpastatin was exploited to selectively detect the calcium-bound, catalytically competent, conformation of calpain in vitro. Modification of calpastatin domain-1 (Val(114)-Ser(270)) or its N-terminal fragment (Val(114)-Pro(202)), at selected unique cysteine residues with maleimide-AlexaFluor546 did not compromise calpastatin function (inhibition of calpain) or its binding with calpain. Ca(2+)-dependent binding between catalytically dead calpain-2 (Cys(105)Ala) fused with eGFP and these fluorigenic calpastatin peptides generates fluorescent resonance energy transfer (FRET). The FRET signal documents proximity of calpain-2, C-terminally linked fluorophore to specific sites within calpastatin when the proteins form a complex. These results provide important insights into the calcium-dependent interaction between calpain and calpastatin and for holo-calpain-2 in solution experimentally validate some key features of their predicted interactions. These data also provide proof of concept that the calpastatin-based reagents may be useful to selectively detect the active conformation of calpain.

Indexed as

Amino Acid SequenceCalciumCalcium-Binding ProteinsCalpainCatalytic DomainCysteine Proteinase InhibitorsEnzyme ActivationHumansModels, BiologicalModels, MolecularMolecular Sequence DataProtein ConformationProtein Structure, TertiarySubstrate SpecificityCalciumCalcium-Binding ProteinsCalpaincalpastatinCysteine Proteinase Inhibitors

Identifiers

PMID18793761
PMCPMC2646846
OpenAlexW2029977896

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.