Evidence map›Paper›PMID 18791222›Full record

ArticleGenetics2008

Idaten is a new cold-inducible transposon of Volvox carteri that can be used for tagging developmentally important genes.

Noriko Ueki, Ichiro Nishii

Abstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. On the Trail ofInternational journal of molecular sciences · 2020
    Article
  5. Review
  6. Article
  7. Article
  8. Non-model model organisms.BMC biology · 2017
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Green algae and the origins of multicellularity in the plant kingdom.Cold Spring Harbor perspectives in biology · 2014
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Genomics of Volvocine Algae.Advances in botanical research
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Noriko UekiRIKEN Advanced Science Institute, Wako-shi, Saitama, 351-0198, Japan.
Ichiro Nishii

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A cold-inducible transposon called Jordan has previously been used to tag and recover genes controlling key aspects of Volvox development, including the process called inversion. In a search for additional genes, we isolated 17 new inversionless mutants from cultures grown at 24 degrees (the temperature that activates Jordan transposition). These mutants were stable at 32 degrees, but generated revertants at 24 degrees . DNA blots revealed that one mutant had a transposon unrelated to Jordan inserted in invA ("inversionless A"). This new transposon, which we named Idaten, has terminal inverted repeats (TIRs) beginning with CCCTA, and upon insertion it creates a 3-bp target-site duplication. It appears to belong to the CACTA superfamily of class II DNA transposons, which includes En/Spm. No significant open reading frames were in the Idaten sequence, but we retrieved another element with Idaten-type TIRs encoding a protein similar to the En/Spm transposase as a candidate for an Idaten-specific transposase. We found that in five of the new inversionless strains we could not find any Jordan insertions causing the phenotype to possess insertions of an Idaten family member in a single locus (invC). This clearly indicates that Idaten is a potentially powerful alternative to Jordan for tagging developmentally important genes in Volvox.

Indexed as

Cold TemperatureGene Expression Regulation, DevelopmentalAlgal ProteinsAmino Acid SequenceBase SequenceBlotting, SouthernCloning, MolecularDNA, AlgalDNA, PlantDNA Transposable ElementsGenome, PlantMolecular Sequence DataMutagenesis, InsertionalPolymerase Chain ReactionRetroelementsSequence Homology, Amino AcidAlgal ProteinsDNA, AlgalDNA, PlantDNA Transposable ElementsRetroelementsTransposases

Identifiers

PMID18791222
PMCPMC2581939

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.