Evidence map›Paper›PMID 18791219›Full record

ArticleGenetics2008

Nonsense-mediated decay of ash1 nonsense transcripts in Saccharomyces cerevisiae.

Wei Zheng, Jonathan S Finkel, Sharon M Landers, Roy M Long, Michael R Culbertson

Abstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Biodiversity ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Wei ZhengLaboratories of Genetics and Molecular Biology, University of Wisconsin, Madison, Wisconsin 53706, USA.
Jonathan S Finkel
Sharon M Landers
Roy M Long
Michael R Culbertson

Funding

The NMD pathway in RNA surveillance and gene expressionR01GM065172 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI CULBERTSON, MICHAEL R · 2002 to 2005
$1.2M
Role of Yeast Sen1p in RNA Maturation Pathways (Predoctoral Fellowhips for StudenF31GM077078 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FINKEL, JONATHAN SEWELL · 2006 to 2008
$83k
NIGMS NIH HHS F31 GM077078NIGMS NIH HHS GM65172NIGMS NIH HHS R01 GM065172
6 · The paper itself

Abstract

Nonsense-mediated mRNA decay (NMD) performs two functions in eukaryotes, one in controlling the expression level of a substantial subset of genes and the other in RNA surveillance. In the vast majority of genes, nonsense mutations render the corresponding transcripts prone to surveillance and subject to rapid degradation by NMD. To examine whether some classes of nonsense transcripts escape surveillance, we asked whether NMD acts on mRNAs that undergo subcellular localization prior to translation. In Saccharomyces cerevisiae, wild-type ASH1 mRNA is one of several dozen transcripts that are exported from the mother-cell nucleus during mitotic anaphase, transported to the bud tip on actin cables, anchored at the bud tip, and translated. Although repressed during transport, translation is a prerequisite for NMD. We found that ash1 nonsense mutations affect transport and/or anchoring independently of NMD. The nonsense transcripts respond to NMD in a manner dependent on the position of the mutation. Maximal sensitivity to NMD occurs when transport and translational repression are simultaneously impaired. Overall, our results suggest a model in which ash1 mRNAs are insensitive to NMD while translation is repressed during transport but become sensitive once repression is relieved.

Indexed as

Transcription, GeneticBiological TransportBlotting, NorthernCell NucleusCodon, NonsenseDNA-Binding ProteinsFluorescent DyesGene Expression Regulation, FungalImmunoprecipitationOpen Reading FramesPolymerase Chain ReactionRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionRNA, FungalRNA, MessengerRNA Processing, Post-TranscriptionalASH1 protein, S cerevisiaeCodon, NonsenseDNA-Binding ProteinsFluorescent DyesRepressor ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID18791219
PMCPMC2581943

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.