Evidence map›Paper›PMID 18788736›Full record

ArticleJournal of the American Chemical Society2008

Spectra and kinetic studies of the compound I derivative of cytochrome P450 119.

Xin Sheng, John H Horner, Martin Newcomb

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 63 citations in OpenAlex.

  1. Factors controlling the reactivity of synthetic compound-I Analogs.Journal of porphyrins and phthalocyanines · 2023
    Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Reactive intermediates in cytochrome p450 catalysis.The Journal of biological chemistry · 2013
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Inactivation of cystathionine beta-synthase with peroxynitrite.Archives of biochemistry and biophysics · 2009
    Article
  17. Article
  18. Article
  19. Article
  20. A highly reactive p450 model compound I.Journal of the American Chemical Society · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xin ShengDepartment of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607, USA.
John H Horner
Martin Newcomb
University of Illinois Chicago · US

Funding

MECHANISTIC PROBES FOR ENZYME-CATALYZED OXIDATIONSR01GM048722 · NIGMS · WAYNE STATE UNIVERSITY · PI NEWCOMB, MARTIN E · 1993 to 2010
$2.6M
NIGMS NIH HHS GM-4872NIGMS NIH HHS R01 GM048722
6 · The paper itself

Abstract

The Compound I derivative of cytochrome P450 119 (CYP119) was produced by laser flash photolysis of the corresponding Compound II derivative, which was first prepared by reaction of the resting enzyme with peroxynitrite. The UV-vis spectrum of the Compound I species contained an asymmetric Soret band that could be resolved into overlapping transitions centered at approximately 367 and approximately 416 nm and a Q band with lambda(max) approximately 650 nm. Reactions of the Compound I derivative with organic substrates gave epoxidized (alkene oxidation) and hydroxylated (C-H oxidation) products, as demonstrated by product studies and oxygen-18 labeling studies. The kinetics of oxidations by CYP119 Compound I were measured directly; the reactions included hydroxylations of benzyl alcohol, ethylbenzene, Tris buffer, lauric acid, and methyl laurate and epoxidations of styrene and 10-undecenoic acid. Apparent second-order rate constants, equal to the product of the equilibrium binding constant (K(bind)) and the first-order oxidation rate constant (k(ox)), were obtained for all of the substrates. The oxidations of lauric acid and methyl laurate displayed saturation kinetic behavior, which permitted the determination of both K(bind) and k(ox) for these substrates. The unactivated C-H positions of lauric acid reacted with a rate constant of k(ox) = 0.8 s(-1) at room temperature. The CYP119 Compound I derivative is more reactive than model Compound I species [iron(IV)-oxo porphyrin radical cations] and similar in reactivity to the Compound I derivative of the heme-thiolate enzyme chloroperoxidase. Kinetic isotope effects (kH/kD) for oxidations of benzyl alcohol and ethylbenzene were small, reflecting the increased reactivity of the Compound I derivative in comparison to models. Nonetheless, CYP119 Compound I apparently is much less reactive than the oxidizing species formed in the P450 cam reaction cycle. Studies of competition kinetics employing CYP119 activated by hydrogen peroxide indicated that the same oxidizing transient is formed in the photochemical reaction and in the hydrogen peroxide shunt reaction.

Indexed as

Archaeal ProteinsCytochrome P-450 Enzyme SystemKineticsMolecular StructureOxidation-ReductionPeroxynitrous AcidPhotolysisSpectrophotometrySubstrate SpecificitySulfolobus solfataricusArchaeal ProteinsCYP119 protein, Sulfolobus solfataricusCytochrome P-450 Enzyme SystemPeroxynitrous Acid

Identifiers

PMID18788736
PMCPMC2907162
OpenAlexW1988853058

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.