Evidence map›Paper›PMID 18787764›Full record

ReviewCell biochemistry and biophysics2008

Mechanosensitive channels: insights from continuum-based simulations.

Yuye Tang, Jejoong Yoo, Arun Yethiraj, Qiang Cui, Xi Chen

Abstract readReview
In one paragraph

Review in Cell biochemistry and biophysics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Models of Cellular Mechanosensation.Results and problems in cell differentiation · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Systematic multiscale simulation of membrane protein systems.Current opinion in structural biology · 2009
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yuye TangDepartment of Civil Engineering and Engineering Mechanics, Nanomechanics Research Center, Columbia University, New York, NY 10027, USA.
Jejoong Yoo
Arun Yethiraj
Qiang Cui
Xi Chen

Funding

Coupling between conformation and chemistry in enzymesR01GM071428 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CUI, QIANG · 2005 to 2009
$976k
NIGMS NIH HHS R01 GM071428NIGMS NIH HHS R01-GM071428
6 · The paper itself

Abstract

Mechanotransduction plays an important role in regulating cell functions and it is an active topic of research in biophysics. Despite recent advances in experimental and numerical techniques, the intrinsic multiscale nature imposes tremendous challenges for revealing the working mechanisms of mechanosensitive channels. Recently, a continuum-mechanics-based hierarchical modeling and simulation framework has been established and applied to study the mechanical responses and gating behaviors of a prototypical mechanosensitive channel, the mechanosensitive channel of large conductance (MscL) in bacteria Escherichia coli (E. coli), from which several putative gating mechanisms have been tested and new insights are deduced. This article reviews these latest findings using the continuum mechanics framework and suggests possible improvements for future simulation studies. This computationally efficient and versatile continuum-mechanics-based protocol is poised to make contributions to the study of a variety of mechanobiology problems.

Indexed as

Computer SimulationEscherichia coliEscherichia coli ProteinsIon Channel GatingIon ChannelsMechanotransduction, CellularModels, BiologicalProtein ConformationEscherichia coli ProteinsIon ChannelsMscL protein, E coli

Identifiers

PMID18787764
PMCPMC2651832

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.