Evidence map›Paper›PMID 18787002›Full record

ArticleJournal of virology2008

Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell.

Naoyuki Miyazaki, Tamaki Uehara-Ichiki, Li Xing, Leif Bergman, Akifumi Higashiura, Atsushi Nakagawa, Toshihiro Omura, R Holland Cheng

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Role of Plant Virus Movement Proteins in Suppression of Host RNAi Defense.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Review
  6. Review
  7. Geometric architecture of viruses.World journal of virology · 2020
    Review
  8. From dengue to Zika: the wide spread of mosquito-borne arboviruses.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Cryo-EM structure of a transcribing cypovirus.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  19. Article
  20. Atomic model of a cypovirus built from cryo-EM structure provides insight into the mechanism of mRNA capping.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Naoyuki MiyazakiDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, California 95616, USA.
Tamaki Uehara-Ichiki
Li Xing
Leif Bergman
Akifumi Higashiura
Atsushi Nakagawa
Toshihiro Omura
R Holland Cheng
Central Region Agricultural Research Center · JPKarolinska Institutet · SEOsaka University · JPUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The conservation of the core structure and diversification of the external features among the turreted reoviruses appear to be relevant to structural evolution in facilitating the infection of diverse host species. The structure of Rice ragged stunt virus (RRSV), in the genus Oryzavirus of the family Reoviridae, is determined to show a core composed of capsid shell, clamps, and long turrets. The RRSV core structure is equivalent to the core structure of Orthoreovirus and the virion structure of Cytoplasmic polyhedrosis virus (CPV). In RRSV, five peripheral trimers surround each long turret and sit at the Q trimer position in the T=13l icosahedral symmetry, a structural feature unique to turreted reoviruses. That is, the core of RRSV is partially covered by 60 copies of the peripheral trimer. In contrast, the core of Orthoreovirus is covered by 200 copies of the trimer that sit at the Q, R, S, and T trimer positions. Our results suggest that among the three viruses, RRSV has a structure intermediate between that of Orthoreovirus and the CPV virion. This conclusion coincides with the results of the phylogenetic analysis of amino acid sequences of RNA-dependent RNA polymerases.

Indexed as

Biological EvolutionCapsidMicroscopy, Electron, TransmissionModels, BiologicalOrthoreovirusOryzaProtein Structure, QuaternaryReoviridae

Identifiers

PMID18787002
PMCPMC2573255
OpenAlexW2150673969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.