Evidence map›Paper›PMID 18782837›Full record

ArticleJournal of medical genetics2009

Phenotypic variation within European carriers of the Y-chromosomal gr/gr deletion is independent of Y-chromosomal background.

C Krausz, C Giachini, Y Xue, M K O'Bryan, J Gromoll, E Rajpert-de Meyts, R Oliva, I Aknin-Seifer, E Erdei, N Jorgensen and 9 more

Abstract read
In one paragraph

Article in Journal of medical genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Guideline
  3. Trial
  4. Article
  5. Review
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  7. Article
  8. Review
  9. Genetic disorders and male infertility.Reproductive medicine and biology · 2020
    Review
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  12. Review
  13. Article
  14. Article
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  16. Article
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  19. Article
  20. Genetic evaluation of male infertility.Translational andrology and urology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

C KrauszAndrology Unit, Department of Clinical Physiopathology, University of Florence, Viale Pieraccini, 6 Florence 50139, Italy. c.krausz@dfc.unifi.it
C Giachini
Y Xue
M K O'Bryan
J Gromoll
E Rajpert-de Meyts
R Oliva
I Aknin-Seifer
E Erdei
N Jorgensen
M Simoni
J L Ballescà
R Levy
G Balercia
P Piomboni
E Nieschlag
G Forti
R McLachlan
C Tyler-Smith

Funding

Wellcome Trust 077009
6 · The paper itself

Abstract

backgroundPrevious studies have compared sperm phenotypes between men with partial deletions within the AZFc region of the Y chromosome and non-carriers, with variable results. In this study, a separate question was investigated, the basis of the variation in sperm phenotype within gr/gr deletion carriers, which ranges from normozoospermia to azoospermia. Differences in the genes removed by independent gr/gr deletions, the occurrence of subsequent duplications or the presence of linked modifying variants elsewhere on the chromosome have been suggested as possible causal factors. This study set out to test these possibilities in a large sample of gr/gr deletion carriers with known phenotypes spanning the complete range.

resultsIn total, 169 men diagnosed with gr/gr deletions from six centres in Europe and one in Australia were studied. The DAZ and CDY1 copies retained, the presence or absence of duplications and the Y-chromosomal haplogroup were characterised. Although the study had good power to detect factors that accounted for >or=5.5% of the variation in sperm concentration, no such factor was found. A negative effect of gr/gr deletions followed by b2/b4 duplication was found within the normospermic group, which remains to be further explored in a larger study population. Finally, significant geographical differences in the frequency of different subtypes of gr/gr deletions were found, which may have relevance for the interpretation of case control studies dealing with admixed populations.

conclusionsThe phenotypic variation of gr/gr carriers in men of European origin is largely independent of the Y-chromosomal background.

Indexed as

Chromosome DeletionGenetic VariationPhenotypeAustraliaChromosomes, Human, YDeleted in Azoospermia 1 ProteinEuropeGene DosageGenetic LociHaplotypesHeterozygoteHumansMaleModels, GeneticNuclear ProteinsRNA-Binding ProteinsCDY1 protein, humanCDY2A protein, humanDAZ1 protein, humanDAZL protein, humanDeleted in Azoospermia 1 ProteinNuclear ProteinsRNA-Binding ProteinsSeminal Plasma Proteins

Identifiers

PMID18782837
PMCPMC2698292

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.