Evidence map›Paper›PMID 18782835›Full record

ArticleNucleic acids research2008

Loss of DNA ligase IV prevents recognition of DNA by double-strand break repair proteins XRCC4 and XLF.

Sumithra Jayaram, Gary Ketner, Noritaka Adachi, Les A Hanakahi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.1field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. The Immunogenic Role of Self-DNA in T Cell Immunity.Clinical reviews in allergy & immunology · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sumithra JayaramDepartment of Biochemistry and Molecular Biology, Department of Molecular Microbiology and Immunology, Johns Hopkins University, Bloomberg School of Public Health, Baltimore, MD 21205, USA.
Gary Ketner
Noritaka Adachi
Les A Hanakahi
Johns Hopkins University · USYokohama City University · JP

Funding

SCREENING OF CELLS &TISSUES FOR HIVU42RR005991 · NCRR · BIOVEST INTERNATIONAL, INC. · PI HIRSCHEL, MARK D. · 1992 to 2005
$3.0M
DOUBLE STRAND BREAK REPAIR--INHIBITION BY ADENOVIRUS E4R01CA082127 · NCI · JOHNS HOPKINS UNIVERSITY · PI KETNER, GARY W · 2001 to 2005
$1.2M
MOLECULAR MECHANISMS OF NHEJ IN MAMMALIAN CELLSR01GM070639 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HANAKAHI, LESLYN A · 2004 to 2008
$1.2M
NCI NIH HHS 5R01CA082127NCRR NIH HHS U42 RR05991NIGMS NIH HHS GM070639-1
6 · The paper itself

Abstract

The repair of DNA double-strand breaks by nonhomologous end-joining (NHEJ) is essential for maintenance of genomic integrity and cell viability. Central to the molecular mechanism of NHEJ is DNA ligase IV/XRCC4/XLF complex, which rejoins the DNA. During adenovirus (Ad5) infection, ligase IV is targeted for degradation in a process that requires expression of the viral E1B 55k and E4 34k proteins while XRCC4 and XLF protein levels remain unchanged. We show that in Ad5-infected cells, loss of ligase IV is accompanied by loss of DNA binding by XRCC4. Expression of E1B 55k and E4 34k was sufficient to cause loss of ligase IV and loss of XRCC4 DNA binding. Using ligase IV mutant human cell lines, we determined that the absence of ligase IV, and not expression of viral proteins, coincided with inhibition of DNA binding by XRCC4. In ligase IV mutant human cell lines, DNA binding by XLF was also inhibited. Expression of both wild-type and adenylation-mutant ligase IV in ligase IV-deficient cells restored DNA binding by XRCC4. These data suggest that the intrinsic DNA-binding activities of XRCC4 and XLF may be subject to regulation and are down regulated in human cells that lack ligase IV.

Indexed as

DNA Breaks, Double-StrandedDNA RepairAdenoviridaeAdenovirus E1B ProteinsAdenovirus E4 ProteinsCell LineDNADNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA Repair EnzymesHeLa CellsHumansMutationProtein BindingAdenovirus E1B ProteinsAdenovirus E4 ProteinsDNADNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA Repair EnzymesLIG4 protein, humanNHEJ1 protein, humanXRCC4 protein, human

Identifiers

PMID18782835
PMCPMC2566893
OpenAlexW2158893984

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.