Evidence map›Paper›PMID 18782763›Full record

ArticleThe Journal of biological chemistry2008

In vivo and in vitro examination of stability of primary hyperoxaluria-associated human alanine:glyoxylate aminotransferase.

Erin D Hopper, Adrianne M C Pittman, Michael C Fitzgerald, Chandra L Tucker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Structural dynamics shape the fitness window of alanine:glyoxylate aminotransferase.Protein science : a publication of the Protein Society · 2022
    Article
  6. Review
  7. Molecular therapy of primary hyperoxaluria.Journal of inherited metabolic disease · 2017
    Review
  8. Article
  9. Article
  10. Emerging novel concept of chaperone therapies for protein misfolding diseases.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2014
    Review
  11. Therapeutic potential of proteasome inhibitors in congenital erythropoietic porphyria.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  12. Article
  13. Update on oxalate crystal disease.Current rheumatology reports · 2013
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. An update on primary hyperoxaluria.Nature reviews. Nephrology · 2012
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Erin D HopperDepartment of Biology and Chemistry, Duke University, Durham, North Carolina 27708, USA.
Adrianne M C Pittman
Michael C Fitzgerald
Chandra L Tucker
Duke University · US

Funding

Analysis of PH1-associated alanine:glyoxylate aminotranferase (AGT) using yeastR01DK081584 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI TUCKER, CHANDRA L · 2008 to 2011
$1.5M
Identification of pharmacological chaperones for misfolded proteinsR21DK075291 · NIDDK · DUKE UNIVERSITY · PI TUCKER, CHANDRA L · 2008 to 2009
$281k
NIDDK NIH HHS R01 DK081584NIDDK NIH HHS R21 DK075291NIDDK NIH HHS R21 DK075291-01A1
6 · The paper itself

Abstract

Primary hyperoxaluria type I is a severe kidney stone disease caused by mutations in the protein alanine:glyoxylate aminotransferase (AGT). Many patients have mutations in AGT that are not deleterious alone but act synergistically with a common minor allele polymorphic variant to impair protein folding, dimerization, or localization. Although studies suggest that the minor allele variant itself is destabilized, no direct stability studies have been carried out. In this report, we analyze AGT function and stability using three approaches. First, we describe a yeast complementation growth assay for AGT, in which we show that human AGT can substitute for function of yeast Agx1 and that mutations associated with disease in humans show reduced growth in yeast. The reduced growth of minor allele mutants reflects reduced protein levels, indicating that these proteins are less stable than wild-type AGT in yeast. We further examine stability of AGT alleles in vitro using two direct methods, a mass spectrometry-based technique (stability of unpurified proteins from rates of H/D exchange) and differential scanning fluorimetry. We also examine the effect of known ligands pyridoxal 5'-phosphate and aminooxyacetic acid on stability. Our work establishes that the minor allele is destabilized and that pyridoxal 5'-phosphate and aminooxyacetic acid binding significantly stabilizes both alleles. To our knowledge, this is the first work that directly measures relative stabilities of AGT variants and ligand complexes. Because previous studies suggest that stabilizing compounds (i.e. pharmacological chaperones) may be effective for treatment of primary hyperoxaluria, we propose that the methods described here can be used in high throughput screens for compounds that stabilize AGT mutants.

Indexed as

AllelesMutationPolymorphism, GeneticEnzyme StabilityGenetic Complementation TestHumansHyperoxaluria, PrimaryLigandsOxamic AcidProtein BindingPyridoxal PhosphateSaccharomyces cerevisiaeTransaminasesVitamin B ComplexAlanine-glyoxylate transaminaseLigandsOxamic AcidPyridoxal PhosphateTransaminasesVitamin B Complex

Identifiers

PMID18782763
PMCPMC2576547
OpenAlexW1986372661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.