Evidence map›Paper›PMID 18780817›Full record

ArticleProtein science : a publication of the Protein Society2008

The effects of macromolecular crowding on the mechanical stability of protein molecules.

Jian-Min Yuan, Chia-Lin Chyan, Huan-Xiang Zhou, Tse-Yu Chung, Haibo Peng, Guanghui Ping, Guoliang Yang

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Gap Junction-Mediated Delivery of Polymeric Macromolecules.ACS biomaterials science & engineering · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. What macromolecular crowding can do to a protein.International journal of molecular sciences · 2014
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Probing osmolyte participation in the unfolding transition state of a protein.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Article
  18. Article
  19. Article
  20. Rate theories for biologists.Quarterly reviews of biophysics · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jian-Min YuanDepartment of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA.
Chia-Lin Chyan
Huan-Xiang Zhou
Tse-Yu Chung
Haibo Peng
Guanghui Ping
Guoliang Yang

Funding

THEORY OF PROTEIN/PROTEIN ASSOCIATIONR01GM058187 · NIGMS · FLORIDA STATE UNIVERSITY · PI ZHOU, HUAN-XIANG · 1998 to 2016
$3.7M
Single molecule studies of protein folding/refoldingR01GM071793 · NIGMS · DREXEL UNIVERSITY · PI YANG, GUOLIANG · 2004 to 2008
$760k
NIGMS NIH HHS R01 GM058187NIGMS NIH HHS R01-GM058187NIGMS NIH HHS R01 GM071793NIGMS NIH HHS R01-GM071793
6 · The paper itself

Abstract

Macromolecular crowding, a common phenomenon in the cellular environments, can significantly affect the thermodynamic and kinetic properties of proteins. A single-molecule method based on atomic force microscopy (AFM) was used to investigate the effects of macromolecular crowding on the forces required to unfold individual protein molecules. It was found that the mechanical stability of ubiquitin molecules was enhanced by macromolecular crowding from added dextran molecules. The average unfolding force increased from 210 pN in the absence of dextran to 234 pN in the presence of 300 g/L dextran at a pulling speed of 0.25 microm/sec. A theoretical model, accounting for the effects of macromolecular crowding on the native and transition states of the protein molecule by applying the scaled-particle theory, was used to quantitatively explain the crowding-induced increase in the unfolding force. The experimental results and interpretation presented could have wide implications for the many proteins that experience mechanical stresses and perform mechanical functions in the crowded environment of the cell.

Indexed as

Protein FoldingCircular DichroismDextransKineticsMicroscopy, Atomic ForceMicroscopy, Scanning ProbeProtein StabilityProtein Structure, SecondaryThermodynamicsUbiquitinDextransUbiquitin

Identifiers

PMID18780817
PMCPMC2590915

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.