Evidence map›Paper›PMID 18778937›Full record

ArticleBioorganic & medicinal chemistry letters2008

Immucillins in custom catalytic-site cavities.

Andrew S Murkin, Keith Clinch, Jennifer M Mason, Peter C Tyler, Vern L Schramm

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Tight binding enantiomers of pre-clinical drug candidates.Bioorganic & medicinal chemistry · 2015
    Article
  2. Mannich bases in medicinal chemistry and drug design.European journal of medicinal chemistry · 2015
    Review
  3. Article
  4. Article
  5. On the Origin of the Chemical Barrier and Tunneling in Enzymes.Journal of physical organic chemistry · 2010
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew S MurkinDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, 1300 Morris Park Avenue, Bronx, NY 10461, USA.
Keith Clinch
Jennifer M Mason
Peter C Tyler
Vern L Schramm

Funding

TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR37GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1998 to 2007
$3.5M
NIGMS NIH HHS R37 GM041916
6 · The paper itself

Abstract

Neighboring-group participation in the reaction catalyzed by purine nucleoside phosphorylase involves a compression mode between the 5'- and 4'-ribosyl oxygens, facilitated by His257. The His257Gly mutant opens a space in the catalytic site. Hydrophobic 5'-substituted Immucillins are transition-state analogue inhibitors of this mutant enzyme. Dissociation constants as low as 2pM are achieved, with K(m)/K(d) as high as 400,000,000.

Indexed as

Catalytic DomainPurine-Nucleoside PhosphorylaseCrystallography, X-RayGlycineHistidineHumansImidazolesKineticsMutationProtein ConformationPurine NucleosidesPyrimidinonesStructure-Activity RelationshipforodesineGlycineHistidineImidazolesPurine-Nucleoside PhosphorylasePurine NucleosidesPyrimidinones

Identifiers

PMID18778937
PMCPMC2614083

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.