Evidence map›Paper›PMID 18778731›Full record

ReviewPlasmid2008

Revised nomenclature for transposable genetic elements.

Adam P Roberts, Michael Chandler, Patrice Courvalin, Gérard Guédon, Peter Mullany, Tony Pembroke, Julian I Rood, C Jeffery Smith, Anne O Summers, Masataka Tsuda and 1 more

Abstract readReview
In one paragraph

Review in Plasmid, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed.

  1. Role of Mobilome in Carbapenem Resistance.Antibiotics (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2025
    Review
  9. Article
  10. Genetic Characteristics of Novel IncInfection and drug resistance · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. First Report of OXA-181-ProducingMicrobiology spectrum · 2023
    Article
  16. Article
  17. Epidemiology, molecular characterization, and drug resistance of IncHI5 plasmids from Enterobacteriaceae.International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
  18. Review
  19. Article
  20. First report of coexistence ofFrontiers in microbiology · 2023
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Adam P RobertsDivision of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London WC1X 8LD, UK. aroberts@eastman.ucl.ac.uk
Michael Chandler
Patrice Courvalin
Gérard Guédon
Peter Mullany
Tony Pembroke
Julian I Rood
C Jeffery Smith
Anne O Summers
Masataka Tsuda
Douglas E Berg

Funding

ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR01AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI SMITH, CHARLES J. · 1999 to 2014
$3.5M
H.PYLORI POPULATION GENETICS AND GENOME EVOLUTIONR01DK063041 · NIDDK · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2003 to 2007
$1.6M
B.FRAGILIS MULTIPLE DRUG RESISTANCE-ORIGIN AND CONTROLR01AI028884 · NIAID · EAST CAROLINA UNIVERSITY · PI SMITH, CHARLES J. · 1991 to 2005
$1.0M
ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR56AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI ROCHA, EDSON R, SMITH, CHARLES J. · 2009 to 2009
$334k
Biotechnology and Biological Sciences Research CouncilMedical Research CouncilNIAID NIH HHS AI40588NIAID NIH HHS R01 AI028884NIAID NIH HHS R01 AI040588NIAID NIH HHS R56 AI040588NIDDK NIH HHS DK63041NIDDK NIH HHS R01 DK063041Wellcome Trust
6 · The paper itself

Abstract

Transposable DNA elements occur naturally in the genomes of nearly all species of prokaryotes. A proposal for a uniform transposable element nomenclature was published prominently in the 1970s but is not, at present, available online even in abstract form, and many of the newly discovered elements have been named without reference to it. We propose here an updated version of the original nomenclature system for all of the various types of prokaryotic, autonomous, transposable elements excluding insertion sequences, for which a nomenclature system already exists. The use of this inclusive and sequential Tn numbering system for transposable elements, as described here, recognizes the ease of interspecies spread of individual elements, and allows for the naming of mosaic elements containing segments from two or more previously described types of transposons or plasmids. It will guard against any future need to rename elements following changes in bacterial nomenclature which occurs constantly with our increased understanding of bacterial phylogenies and taxonomic groupings. It also takes into account the increasing importance of metagenomic sequencing projects and the continued identification of new mobile elements from unknown hosts.

Indexed as

Terminology as TopicDNA Transposable ElementsDNA Transposable Elements

Identifiers

PMID18778731
PMCPMC3836210

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.