Evidence map›Paper›PMID 18773930›Full record

ReviewVirus research2009

Cis-active RNA elements (CREs) and picornavirus RNA replication.

Benjamin P Steil, David J Barton

Open access · greenAbstract readReview
In one paragraph

Review in Virus research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Seneca Valley virus replicons are packaged inMolecular therapy oncolytics · 2023
    Article
  11. Review
  12. Frontiers in cellular and infection microbiology · 2022
    Article
  13. Article
  14. A single mutation in theEmerging microbes & infections · 2021
    Article
  15. Article
  16. Article
  17. Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Review
  19. Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Benjamin P SteilDepartment of Microbiology and Program in Molecular Biology, University of Colorado Denver, School of Medicine, United States.
David J Barton
University of Colorado Denver · US

Funding

Enterovirus RNA Translation and ReplicationR01AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 1998 to 2024
$7.2M
Molecular Pathogenesis of Infectious DiseasesT32AI052066 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAN DYK, LINDA F. · 2002 to 2022
$2.3M
Enterovirus RNA Translation and ReplicationR56AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2009 to 2009
$341k
Enterovirus RNA Translation and ReplicationR21AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2003 to 2003
$268k
NIAID NIH HHS AI42189NIAID NIH HHS R01 AI042189NIAID NIH HHS R21 AI042189NIAID NIH HHS R56 AI042189NIAID NIH HHS T32 AI052066NIAID NIH HHS T32-AI052066
6 · The paper itself

Abstract

Our understanding of picornavirus RNA replication has improved over the past 10 years, due in large part to the discovery of cis-active RNA elements (CREs) within picornavirus RNA genomes. CREs function as templates for the conversion of VPg, the Viral Protein of the genome, into VPgpUpU(OH). These so called CREs are different from the previously recognized cis-active RNA sequences and structures within the 5' and 3' NTRs of picornavirus genomes. Two adenosine residues in the loop of the CRE RNA structures allow the viral RNA-dependent RNA polymerase 3D(Pol) to add two uridine residues to the tyrosine residue of VPg. Because VPg and/or VPgpUpU(OH) prime the initiation of viral RNA replication, the asymmetric replication of viral RNA could not be explained without an understanding of the viral RNA template involved in the conversion of VPg into VPgpUpU(OH) primers. We review the growing body of knowledge regarding picornavirus CREs and discuss how CRE RNAs work coordinately with viral replication proteins and other cis-active RNAs in the 5' and 3' NTRs during RNA replication.

Indexed as

Virus Replication3' Untranslated Regions5' Untranslated RegionsAmino Acid SequenceBase SequenceGenome, ViralMolecular Sequence DataNucleic Acid ConformationOpen Reading FramesPicornaviridaeRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins3' Untranslated Regions5' Untranslated RegionsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID18773930
PMCPMC2692539
OpenAlexW2114471303

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.