Evidence map›Paper›PMID 18772307›Full record

ArticleJournal of experimental botany2008

Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry.

Stefanie Wienkoop, Estíbaliz Larrainzar, Mirko Glinski, Esther M González, Cesar Arrese-Igor, Wolfram Weckwerth

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Frontiers in plant science · 2021
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  3. PANOMICS meets germplasm.Plant biotechnology journal · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Stefanie WienkoopInstitute of Biochemistry and Biology, University of Potsdam, c/o MPI-MP, D-14476 Potsdam, Germany. wienkoop@mpimp-golm.mpg.de
Estíbaliz Larrainzar
Mirko Glinski
Esther M González
Cesar Arrese-Igor
Wolfram Weckwerth
Max Planck Institute of Molecular Plant Physiology · DEUniversidad de Navarra · ESUniversidad Publica de Navarra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass spectrometry (MS) has become increasingly important for tissue specific protein quantification at the isoform level, as well as for the analysis of protein post-translational regulation mechanisms and turnover rates. Thanks to the development of high accuracy mass spectrometers, peptide sequencing without prior knowledge of the amino acid sequence--de novo sequencing--can be performed. In this work, absolute quantification of a set of key enzymes involved in carbon and nitrogen metabolism in Medicago truncatula 'Jemalong A17' root nodules is presented. Among them, sucrose synthase (SuSy; EC 2.4.1.13), one of the central enzymes in sucrose cleavage in root nodules, has been further characterized and the relative phosphorylation state of the three most abundant isoforms has been quantified. De novo sequencing provided sequence information of a so far unidentified peptide, most probably belonging to SuSy2, the second most abundant isoform in M. truncatula root nodules. TiO(2)-phosphopeptide enrichment led to the identification of not only a phosphorylation site at Ser11 in SuSy1, but also of several novel phosphorylation sites present in other root nodule proteins such as alkaline invertase (AI; EC 3.2.1.26) and an RNA-binding protein.

Indexed as

SymbiosisAmino Acid SequenceGene Expression Regulation, PlantGlucosyltransferasesMass SpectrometryMedicago truncatulaMolecular Sequence DataNitrogenPhosphoproteinsPhosphorylationPlant ProteinsProtein IsoformsRoot Nodules, PlantSequence Homology, Amino AcidGlucosyltransferasesNitrogenPhosphoproteinsPlant ProteinsProtein Isoformssucrose synthase

Identifiers

PMID18772307
PMCPMC2529246
OpenAlexW1987045831

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.